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  1. The frequency of droughts has dramatically increased over the last 50 years, causing yield declines in cereals, including wheat. Crop varieties with efficient root systems show great potential for plant adapta...

    Authors: Nurealam Siddiqui, Melesech T. Gabi, Mohammad Kamruzzaman, Abebaw M. Ambaw, Tesfaye J. Teferi, Said Dadshani, Jens Léon and Agim Ballvora
    Citation: BMC Genomic Data 2023 24:38
  2. The Golden2-like (GLK) transcription factors are plant-specific transcription factors (TFs) that perform extensive and significant roles in regulating chloroplast development. Here, genome-wide identification, cl...

    Authors: Ruihua Wu, Lin Guo, Yueyang Guo, Lehang Ma, Kehang Xu, Boyu Zhang and Liang Du
    Citation: BMC Genomic Data 2023 24:37
  3. Inborn error of immunity (IEI) comprises a broad group of inherited immunological disorders that usually display an overlap in many clinical manifestations challenging their diagnosis. The identification of di...

    Authors: Cristina Santos Ferreira, Ronaldo da Silva Francisco Junior, Alexandra Lehmkuhl Gerber, Ana Paula de Campos Guimarães, Flávia Anisio Amendola, Fernanda Pinto-Mariz, Monica Soares de Souza, Patrícia Carvalho Batista Miranda, Zilton Farias Meira de Vasconcelos, Ekaterini Simões Goudouris and Ana Tereza Ribeiro Vasconcelos
    Citation: BMC Genomic Data 2023 24:36
  4. A haplotype is a set of DNA variants inherited together from one parent or chromosome. Haplotype information is useful for studying genetic variation and disease association. Haplotype assembly (HA) is a proce...

    Authors: Shuying Sun, Flora Cheng, Daphne Han, Sarah Wei, Alice Zhong, Sherwin Massoudian and Alison B. Johnson
    Citation: BMC Genomic Data 2023 24:35
  5. Evidence shows that genetic factors play important roles in the severity of coronavirus disease 2019 (COVID-19). Sulfatase modifying factor 1 (SUMF1) gene is involved in alveolar damage and systemic inflammatory ...

    Authors: Shaohui Liang, Huixia Gao, Tongxin He, Li Li, Xin Zhang, Lei Zhao, Jie Chen, Yanyan Xie, Jie Bao, Yong Gao, Erhei Dai and Yuling Wang
    Citation: BMC Genomic Data 2023 24:34
  6. Complex physiological adaptations often involve the coordination of molecular responses across multiple tissues. Establishing transcriptomic resources for non-traditional model organisms with phenotypes of int...

    Authors: Blair W. Perry, Michael W. Saxton, Heiko T. Jansen, Corey R. Quackenbush, Brandon D. Evans Hutzenbiler, Charles T. Robbins, Joanna L. Kelley and Omar E. Cornejo
    Citation: BMC Genomic Data 2023 24:33
  7. Considering the co-morbidity of major psychiatric disorders and intelligence with smoking, to increase our understanding of why some people take up smoking or continue to smoke, while others stop smoking witho...

    Authors: Olesya Ajnakina and Andrew Steptoe
    Citation: BMC Genomic Data 2023 24:31
  8. Allele counts of sequence variants obtained by whole genome sequencing (WGS) often play a central role in interpreting the results of genetic and genomic research. However, such variant counts are not readily ...

    Authors: Karina Banasik, Peter L. Møller, Tanya R. Techlo, Peter C. Holm, G. Bragi Walters, Andrés Ingason, Anders Rosengren, Palle D. Rohde, Lisette J. A. Kogelman, David Westergaard, Troels Siggaard, Piotr J. Chmura, Mona A. Chalmer, Ólafur Þ. Magnússon, Guðmundur Á. Þórisson, Hreinn Stefánsson…
    Citation: BMC Genomic Data 2023 24:30
  9. This report provides information about the public release of the 2018–2019 Maize G X E project of the Genomes to Fields (G2F) Initiative datasets. G2F is an umbrella initiative that evaluates maize hybrids and...

    Authors: Dayane Cristina Lima, Alejandro Castro Aviles, Ryan Timothy Alpers, Bridget A. McFarland, Shawn Kaeppler, David Ertl, Maria Cinta Romay, Joseph L. Gage, James Holland, Timothy Beissinger, Martin Bohn, Edward Buckler, Jode Edwards, Sherry Flint-Garcia, Candice N. Hirsch, Elizabeth Hood…
    Citation: BMC Genomic Data 2023 24:29
  10. Polygenic scores (PGSs) combining genetic variants found to be associated with creatinine-based estimated glomerular filtration rate (eGFRcrea) have been applied in various study populations with different age ra...

    Authors: Janina M. Herold, Jana Nano, Mathias Gorski, Thomas W. Winkler, Kira J. Stanzick, Martina E. Zimmermann, Caroline Brandl, Annette Peters, Wolfgang Koenig, Ralph Burkhardt, André Gessner, Iris M. Heid, Christian Gieger and Klaus J. Stark
    Citation: BMC Genomic Data 2023 24:28
  11. With the release of genomic data for B.rapa, B.oleracea, and B.napus, research on the genetic and molecular functions of Brassica spp. has entered a new stage. PEBP genes in plants play an important role in the t...

    Authors: Yanling Li, Lu Xiao, Zhi Zhao, Hongping Zhao and Dezhi Du
    Citation: BMC Genomic Data 2023 24:27
  12. HostSeq was launched in April 2020 as a national initiative to integrate whole genome sequencing data from 10,000 Canadians infected with SARS-CoV-2 with clinical information related to their disease experienc...

    Authors: S Yoo, E Garg, LT Elliott, RJ Hung, AR Halevy, JD Brooks, SB Bull, F Gagnon, CMT Greenwood, JF Lawless, AD Paterson, L Sun, MH Zawati, J Lerner-Ellis, RJS Abraham, I Birol…
    Citation: BMC Genomic Data 2023 24:26
  13. Recently, deep neural networks have been successfully applied in many biological fields. In 2020, a deep learning model AlphaFold won the protein folding competition with predicted structures within the error ...

    Authors: Katarína Grešová, Vlastimil Martinek, David Čechák, Petr Šimeček and Panagiotis Alexiou
    Citation: BMC Genomic Data 2023 24:25
  14. Gastric cancer (GC) is the fourth most common cancer worldwide, with the highest incidence and mortality regardless of sex. Despite technological advances in diagnosing and treating gastric cancer, GC still ha...

    Authors: Eun-Hye Seo, Yun-Jae Shin, Hee-Jin Kim, Jeong-Hwan Kim, Yong Sung Kim and Seon-Young Kim
    Citation: BMC Genomic Data 2023 24:24
  15. As part of a research aiming at presenting an alternative approach for rapid determination of antimicrobial susceptibility by quantification of changes in expression levels of specific marker genes and gene se...

    Authors: Galia Zaide, Inbar Cohen-Gihon, Ohad Shifman, Ofir Israeli, Moshe Aftalion, Sharon Maoz, Theodor Chitlaru, Raphael Ber, Anat Zvi and Ida Steinberger-Levy
    Citation: BMC Genomic Data 2023 24:23
  16. Previous reports revealed that a history of major depressive disorder (MDD) increased the risk of Alzheimer’s disease (AD). The immune disorder is associated with MDD and AD pathophysiology. We aimed to identi...

    Authors: Jin Song, Zilong Ma, Huishi Zhang, Ting Liang and Jun Zhang
    Citation: BMC Genomic Data 2023 24:22
  17. Nepenthes belongs to the monotypic family Nepenthaceae, one of the largest carnivorous plant families. Nepenthes species show impressive adaptive radiation and suffer from being overexploited in nature. Nepenthes...

    Authors: Yuan Gao, Hao-Bin Liao, Ting-Hong Liu, Jia-Ming Wu, Zheng-Feng Wang and Hong-Lin Cao
    Citation: BMC Genomic Data 2023 24:21
  18. Intracranial aneurysm (IA) is a common cerebrovascular disease. The immune mechanism of IA is more complicated, and it is unclear so far. Therefore, it is necessary to continue to explore the immune related mo...

    Authors: Zhengfei Ma, Ping Zhong, Peidong Yue and Zhongwu Sun
    Citation: BMC Genomic Data 2023 24:20
  19. Streptococcus pneumoniae (pneumococcus) represents an important human pathogen, responsible for respiratory and invasive infections in the community. The efficacy of polysaccharide conjugate vaccines formulated a...

    Authors: Weronika Puzia, Jan Gawor, Robert Gromadka, Anna Skoczyńska and Ewa Sadowy
    Citation: BMC Genomic Data 2023 24:19
  20. Diospyros oleifera, one of the most economically important Diospyros species, is an ideal model for studying the fruit development of persimmon. While, the lack of whole-transcriptome has hindered the complex tra...

    Authors: Yang Xu, Cui-yu Liu, Wen-qiang Cheng, Kai-yun Wu and Bang-chu Gong
    Citation: BMC Genomic Data 2023 24:17
  21. The Enterobacter cloacae complex is considered an important opportunistic pathogen. It comprises many members that remain difficult to delineate by phenotypic approaches. Despite its importance in human infection...

    Authors: Matthieu Pot, Célia Ducat, Yann Reynaud, David Couvin, Séverine Ferdinand, Sébastien Breurec, Antoine Talarmin and Stéphanie Guyomard-Rabenirina
    Citation: BMC Genomic Data 2023 24:16
  22. Petrea volubilis, a member of the Order Lamiales and the Verbenaceae family, is an important horticultural species that has been used in traditional folk medicine. To provide a genome sequence for comparative st...

    Authors: John P. Hamilton, Brieanne Vaillancourt, Joshua C. Wood and C. Robin Buell
    Citation: BMC Genomic Data 2023 24:14
  23. Genome Wide Association Studies (GWAS) are based on the observation of genome-wide sets of genetic variants – typically single-nucleotide polymorphisms (SNPs) – in different individuals that are associated wit...

    Authors: Anna Bernasconi, Arif Canakoglu and Federico Comolli
    Citation: BMC Genomic Data 2023 24:13

    The Correction to this article has been published in BMC Genomic Data 2023 24:32

  24. The peaberry bean in Arabica coffee has exceptional quality compared to the regular coffee bean. Understanding the molecular mechanism of bean quality is imperative to introduce superior coffee quality traits....

    Authors: Xingfei Fu, Guiping Li, Faguang Hu, Jiaxiong Huang, Yuqiang Lou, Yaqi Li, Yanan Li, Hongyan He, YuLan Lv and Jinhuan Cheng
    Citation: BMC Genomic Data 2023 24:12
  25. The marine cyanobacterium Prochlorococcus is a critical part of warm ocean ecosystems and a model for studying microbial evolution and ecology. To expand the representation of this organism’s vast wild diversity ...

    Authors: Jessie W. Berta-Thompson, Elaina Thomas, Andrés Cubillos-Ruiz, Thomas Hackl, Jamie W. Becker, Allison Coe, Steven J. Biller, Paul M. Berube and Sallie W. Chisholm
    Citation: BMC Genomic Data 2023 24:11
  26. The fungal pathogen Thecaphora frezii Carranza & Lindquist causes peanut smut, a severe disease currently endemic in Argentina. To study the ecology of T. frezii and to understand the mechanisms of smut resistanc...

    Authors: Renee S. Arias, Cinthia Conforto, Valerie A. Orner, Edgardo J. Carloni, Juan H. Soave, Alicia N. Massa, Marshall C. Lamb, Nelson Bernardi-Lima and Alejandro M. Rago
    Citation: BMC Genomic Data 2023 24:9
  27. Rice is one of the most important food crops in the world and mainly cultivated in paddy field by transplanting seedlings. However, increasing water scarcity due to climate change, labor cost for transplanting...

    Authors: Wisdom Mawuli Edzesi, Xiaojing Dang, Erbao Liu, William Kwame Nuako Bandoh, Patience Mansa Gakpetor, Daniel Aninagyei Ofori and Delin Hong
    Citation: BMC Genomic Data 2023 24:8
  28. High-density single nucleotide polymorphisms (SNPs) are the most abundant and robust form of genetic variants and hence make highly favorable markers to determine the genetic diversity and relationship, enhanc...

    Authors: Mihret Yirgu, Mulugeta Kebede, Tileye Feyissa, Berhane Lakew, Aemiro Bezabih Woldeyohannes and Mulusew Fikere
    Citation: BMC Genomic Data 2023 24:7
  29. Thrombocytopenia is a condition that causes a low amount of blood platelets. Platelets are blood cells that play an essential role in blood coagulation. Therefore, thrombocytopenia can put the patient at risk ...

    Authors: Eun-Hye Seo, Jeong-Hwan Kim, Da-Hee Kim, Jung-Hwa Oh and Seon-Young Kim
    Citation: BMC Genomic Data 2023 24:6
  30. Microsatellites are a ubiquitous occurrence in prokaryotic and eukaryotic genomes. Microsatellites have become one of the most popular classes of genetic markers due to their high reproducibility, multi-alleli...

    Authors: Weiwei Shao, Wei Cai, Fen Qiao, Zhihua Lin and Li Wei
    Citation: BMC Genomic Data 2023 24:5
  31. Cytoskeleton-related proteins are essential for cell shape maintenance and cytoskeleton remodeling. The spermatozoa of Eriocheir sinensis (Chinese mitten crab) have a unique cellular structure, and the mechanism ...

    Authors: Yulian Tang, Lishuang Sun, Shu Li, Huiting Liu, Lvjing Luo, Zhengyu Chen and Genliang Li
    Citation: BMC Genomic Data 2023 24:4
  32. The Phenomenon of codon usage bias exists in the genomes of prokaryotes and eukaryotes. The codon usage pattern is affected by environmental factors, base mutation, gene flow and gene expression level, among w...

    Authors: Yingzhe Wang, Dacheng Jiang, Kun Guo, Lei Zhao, Fangfang Meng, Jinglei Xiao, Yuan Niu and Yunlong Sun
    Citation: BMC Genomic Data 2023 24:3
  33. Previous studies have shown that the protein kinase cGMP-dependent 2 (PRKG2) gene is associated with dwarfism in humans, dogo Argentines, and Angus cattle, as well as with height and osteoblastogenesis in humans....

    Authors: Tianqi Wang, Ziwen Liu, Xinrui Wang, Yuhua Li, FAHEEM AKHTAR, Mengmeng Li, Zhenwei Zhang, Yandong Zhan, Xiaoyuan Shi, Wei Ren, Bingjian Huang, Changfa Wang and Wenqiong Chai
    Citation: BMC Genomic Data 2023 24:2
  34. Fatty acid metabolism has been reported to play important roles in the development of acute myeloid leukemia (AML), but there are no prognostic signatures composed of fatty acid metabolism-related genes. As th...

    Authors: Miao Chen, Yuan Tao, Pengjie Yue, Feng Guo and Xiaojing Yan
    Citation: BMC Genomic Data 2022 23:85
  35. The reprogramming of metabolism is an important factor in the metastatic process of cancer. In our study, we intended to investigate the predictive value of metabolism-related genes (MRGs) in recurrent gastric...

    Authors: Chenyu Tian, Junjie Zhao, Dan Liu, Jie Sun, Chengbo Ji, Quan Jiang, Haojie Li, Xuefei Wang and Yihong Sun
    Citation: BMC Genomic Data 2022 23:84
  36. The biology of colorectal cancer (CRC) is remained to be elucidated. Numerous genetic and epigenetic modifications are in concert to create and progress CRC. DNA methylation as a principal epigenetic factor ha...

    Authors: Arash Moradi, Milad Shahsavari, Erfan Gowdini, Kamal Mohammadian, Aida Alizamir, Mohammad Khalilollahi, Zahara Mohammadi Abgarmi and Shahla Mohammad Ganji
    Citation: BMC Genomic Data 2022 23:83
  37. Pancreatitis is an inflammatory disorder resulting from the autoactivation of trypsinogen in the pancreas. The genetic basis of the disease is an old phenomenon, and evidence is accumulating for the involvemen...

    Authors: Yuanyang Li, Rekha Khandia, Marios Papadakis, Athanasios Alexiou, Alexander Nikolaevich Simonov and Azmat Ali Khan
    Citation: BMC Genomic Data 2022 23:81
  38. To investigate the prognostic value of ferroptosis-related long noncoding RNAs (lncRNAs) in oral squamous cell carcinoma (OSCC) and to construct a prognostic risk and immune activity model.

    Authors: Lin Qiu, Anqi Tao, Fei Liu, Xianpeng Ge and Cuiying Li
    Citation: BMC Genomic Data 2022 23:80
  39. Zalaria sp. Him3 was reported as a novel fructooligosaccharides (FOS) producing yeast. However, Zalaria spp. have not been widely known and have been erroneously classified as a different black yeast, Aureobasid...

    Authors: Jun Yoshikawa, Minenosuke Matsutani, Mayumi Maeda, Yutaka Kashiwagi and Kenji Maehashi
    Citation: BMC Genomic Data 2022 23:78
  40. While of predominant abundance across vertebrate genomes and significant biological implications, the relevance of short tandem repeats (STRs) (also known as microsatellites) to speciation remains largely elus...

    Authors: Masoud Arabfard, Mahmood Salesi, Yazdan Hassani Nourian, Iman Arabipour, AliMohammad Ali Maddi, Kaveh Kavousi and Mina Ohadi
    Citation: BMC Genomic Data 2022 23:77
  41. Stalk lodging is one of the main factors affecting maize (Zea mays L.) yield and limiting mechanized harvesting. Developing maize varieties with high stalk lodging resistance requires exploring the genetic basis ...

    Authors: Lifen Wu, Yunxiao Zheng, Fuchao Jiao, Ming Wang, Jing Zhang, Zhongqin Zhang, Yaqun Huang, Xiaoyan Jia, Liying Zhu, Yongfeng Zhao, Jinjie Guo and Jingtang Chen
    Citation: BMC Genomic Data 2022 23:76
  42. Little is known about the prognostic risk factors of endometrial cancer. Therefore, finding effective prognostic factors of endometrial cancer is the vital for clinical theranostic. In this study, we construct...

    Authors: Linlin Chen, Guang Zhu, Yanbo Liu, Yupei Shao, Bing Pan and Jianhong Zheng
    Citation: BMC Genomic Data 2022 23:74

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