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  1. Complex disorders are caused by a combination of genetic, environmental and lifestyle factors, and their prevalence can vary greatly across different populations. The extent to which genetic risk, as identifie...

    Authors: Pritesh R. Jain, Myson Burch, Melanie Martinez, Pablo Mir, Jakub P. Fichna, Cezary Zekanowski, Renata Rizzo, Zeynep Tümer, Csaba Barta, Evangelia Yannaki, John Stamatoyannopoulos, Petros Drineas and Peristera Paschou
    Citation: BMC Genomic Data 2023 24:70
  2. Molecular cues linked to heartwood formation open new (complementary) perspectives to genetic breeding programs of Douglas-fir, a tree species largely cultivated in Europe for the natural durability and civil ...

    Authors: Didier Delourme, Laure Brémaud, Idelette Plazanet, Patrick Pélissier, Philippe Label, Nathalie Boizot, Christian Breton, Stéphanie Durand and Guy Costa
    Citation: BMC Genomic Data 2023 24:69
  3. Viruses employ diverse strategies to interfere with host defense mechanisms, including the production of proteins that mimic or resemble host proteins. This study aimed to analyze the similarities between SARS...

    Authors: Behnia Akbari, Ehsan Ahmadi, Mohammad Reza Zabihi, Mina Roshan Zamir, Mina Sadeghi Shaker and Farshid Noorbakhsh
    Citation: BMC Genomic Data 2023 24:68
  4. In 2022, a global outbreak of monkeypox occurred with a significant shift in its epidemiological characteristics. The monkeypox virus (MPXV) belongs to the B.1 lineage, and its genomic variations that were lin...

    Authors: Jie Zhu, Jian Yu, Hao Qin, Xinlei Chen, Chuanchang Wu, Xiaodan Hong, Yafei Zhang and Zhenhua Zhang
    Citation: BMC Genomic Data 2023 24:67
  5. High-Affinity Potassium ions represent one of the most important and large group of potassium transporters. Although HAK genes have been studied in a variety of plant species, yet, remain unexplored in common bea...

    Authors: Afrasyab Khan, Zamarud Shah, Sajid Ali, Nisar Ahmad, Maaz Iqbal, Arif Ullah and Firdous Ayub
    Citation: BMC Genomic Data 2023 24:66
  6. Corynebacterium diphtheriae complex was formed by the species C. diphtheriae, Corynebacterium ulcerans and Corynebacterium pseudotuberculosis in the recent past. In addition to C. diphtheriae, C. ulcerans and C. ...

    Authors: Juliana Nunes Ramos, Max Roberto Batista Araújo, Paulo Victor Pereira Baio, Lincoln Oliveira Sant’Anna, João Flávio Carneiro Veras, Érica Miranda Damásio Vieira, Mireille Ângela Bernardes Sousa, Carlos Henrique Camargo, Cláudio Tavares Sacchi, Karoline Rodrigues Campos, Marlon Benedito Nascimento Santos, Sérgio Bokermann, Luige Biciati Alvim, Louisy Sanches dos Santos, Ana Luiza de Mattos-Guaraldi and Verônica Viana Vieira
    Citation: BMC Genomic Data 2023 24:65
  7. Candidatus Liberibacter asiaticus” (CLas) is an un-culturable α-proteobacterium that caused citrus Huanglongbing (HLB), a destructive disease threatening citrus production worldwide. In China, the presence of HL...

    Authors: Yongqin Zheng, Yun Li, Pengbin Xu, Chaoji Liu, Jianchi Chen, Xiaoling Deng and Zheng Zheng
    Citation: BMC Genomic Data 2023 24:63
  8. As an important food and cash crop, identification of DNA molecular markers is of great significance for molecular marker-assisted breeding of Sorghum (Sorghum bicolor (L.) moench). Although some sorghum-related ...

    Authors: Yanlin An, Xiaobo Xia, Huayan Zheng, Shirui Yu, Tingting Jing and Feng Zhang
    Citation: BMC Genomic Data 2023 24:62
  9. Triple-negative breast cancer (TNBC) is a highly aggressive breast cancer subtype with limited treatment options. Unlike other breast cancer subtypes, the scarcity of specific therapies and greater frequencies...

    Authors: Pere Llinàs-Arias, Miquel Ensenyat-Méndez, Javier I. J. Orozco, Sandra Íñiguez-Muñoz, Betsy Valdez, Chuan Wang, Anja Mezger, Eunkyoung Choi, Yan Zhou Tran, Liqun Yao, Franziska Bonath, Remi-André Olsen, Mattias Ormestad, Manel Esteller, Mathieu Lupien and Diego M. Marzese
    Citation: BMC Genomic Data 2023 24:61
  10. Canine anterior cruciate ligament (ACL) rupture is a common complex disease. Prevalence of ACL rupture is breed dependent. In an epidemiological study, yellow coat color was associated with increased risk of A...

    Authors: BT Lee, LA Baker, M Momen, H Terhaar, EE Binversie, SJ Sample and Peter Muir
    Citation: BMC Genomic Data 2023 24:60
  11. The cytochrome P450 (CYP) superfamily is the largest enzyme metabolism family in plants identified to date, and it is involved in many biological processes, including secondary metabolite biosynthesis, hormone me...

    Authors: Wei Zhang, Hongxiang Li, Qionghou Li, Zewen Wang, Weiwei Zeng, Hao Yin, Kaijie Qi, Ying Zou, Jian Hu, Baisha Huang, Peng Gu, Xin Qiao and Shaoling Zhang
    Citation: BMC Genomic Data 2023 24:58
  12. The establishment of heterotic groups of inbred lines is crucial for hybrid maize breeding programs. Currently, there is no information on the heterotic patterns of the Provitamin A (PVA) inbred lines develope...

    Authors: Abdoul-Raouf Sayadi Maazou, Melaku Gedil, Victor O. Adetimirin, Nnanna Unachukwu, Wende Mengesha, Silvestro Meseka and Abebe Menkir
    Citation: BMC Genomic Data 2023 24:57
  13. Recently accumulated evidence indicates a potential association between COVID-19 and elevated susceptibility to cancer, including male genital cancer. However, the causal nature of this relationship remains un...

    Authors: Dejie Wang, Yingjuan Ma, Lin Yan, Wei Gan, Yugang Han, Jiang-Shan Tan and Wenhua Zhao
    Citation: BMC Genomic Data 2023 24:56
  14. The jasmonate ZIM domain (JAZ) protein is a key repressor of the jasmonate signal transduction pathway, which plays an important role in plant growth and development and defense responses. In this study, based...

    Authors: Gaixia Yang, Shijie Wang, Lianxiang Long, Xiaoyue Yu, Hongyu Cai, Pengyun Chen, Lijiao Gu and Minsheng Yang
    Citation: BMC Genomic Data 2023 24:55
  15. Cells orchestrate histone biogenesis with strict temporal and quantitative control. To efficiently regulate histone biogenesis, the repetitive Drosophila melanogaster replication-dependent histone genes are array...

    Authors: Lauren J. Hodkinson, Connor Smith, H. Skye Comstra, Bukola A. Ajani, Eric H. Albanese, Kawsar Arsalan, Alvaro Perez Daisson, Katherine B. Forrest, Elijah H. Fox, Matthew R. Guerette, Samia Khan, Madeleine P. Koenig, Shivani Lam, Ava S. Lewandowski, Lauren J. Mahoney, Nasserallah Manai…
    Citation: BMC Genomic Data 2023 24:54
  16. Peucedanum praeruptorum Dunn, a traditional Chinese herbal medicine, contains coumarin and volatile oil components that have clinical application value. However, early bolting often occurs in the medicinal mater...

    Authors: Cheng Song, Yingyu Zhang, Yunpeng Zhang, Shanyong Yi, Haoyu Pan, Ranran Liao, Yuanyuan Wang and Bangxing Han
    Citation: BMC Genomic Data 2023 24:53
  17. When polygenic risk score (PRS) is derived from summary statistics, independence between discovery and test sets cannot be monitored. We compared two types of PRS studies derived from raw genetic data (denoted...

    Authors: David Keetae Park, Mingshen Chen, Seungsoo Kim, Yoonjung Yoonie Joo, Rebekah K. Loving, Hyoung Seop Kim, Jiook Cha, Shinjae Yoo and Jong Hun Kim
    Citation: BMC Genomic Data 2023 24:52
  18. Panax ginseng cultivated under the forest is popular because its shape and effective ingredients are similar to wild ginseng. The growth of P. ginseng in the larch forest is generally better than in the broad-...

    Authors: Tong Aizi, Liu Lijuan, Liu Lihua, Liu Wei and Qin Jiamei
    Citation: BMC Genomic Data 2023 24:51
  19. A relevant part of the genetic architecture of complex traits is still unknown; despite the discovery of many disease-associated common variants. Polygenic risk score (PRS) models are based on the evaluation o...

    Authors: Rana Aldisi, Emadeldin Hassanin, Sugirthan Sivalingam, Andreas Buness, Hannah Klinkhammer, Andreas Mayr, Holger Fröhlich, Peter Krawitz and Carlo Maj
    Citation: BMC Genomic Data 2023 24:50
  20. Providencia is a genus of gram-negative bacteria within the order Enterobacterales, closely related to Proteus and Morganella. While ubiquitous in the environment, some species of Providencia, such as P. rettgeri...

    Authors: Steven Batinovic, Hiu Tat Chan, Jason Stiles and Steve Petrovski
    Citation: BMC Genomic Data 2023 24:49
  21. Sarcopenia is a disease diagnosed in the elderly. In patients with sarcopenia, the muscle mass decreases every year. The occurrence of sarcopenia is greatly affected by extrinsic factors such as eating habits,...

    Authors: Jeong-An Gim, Sang-Yeob Lee, Seung Chan Kim, Kyung-Wan Baek, Sung Hyo Seo and Jun-Il Yoo
    Citation: BMC Genomic Data 2023 24:48
  22. Inherited genetic defects in immune system-related genes can result in Inborn Errors of Immunity (IEI), also known as Primary Immunodeficiencies (PID). Diagnosis of IEI disorders is challenging due to overlapp...

    Authors: Cristina Santos Ferreira, Ronaldo da Silva Francisco Junior, Alexandra Lehmkuhl Gerber, Ana Paula de Campos Guimarães, Flavia Amendola Anisio de Carvalho, Bárbara Carvalho Santos dos Reis, Fernanda Pinto-Mariz, Monica Soares de Souza, Zilton Farias Meira de Vasconcelos, Ekaterini Simões Goudouris and Ana Tereza Ribeiro Vasconcelos
    Citation: BMC Genomic Data 2023 24:47
  23. Thysanoptera, commonly known as thrips, are diverse tiny insects whose earliest fossil record dates back to the Triassic period. Since there are few studies on the divergence time of taxa under Thysanoptera, t...

    Authors: Chunying Wu and Hongrui Zhang
    Citation: BMC Genomic Data 2023 24:46
  24. Distant hybridization is an important breeding technique for creating new strains with superior traits by integrating two different genomes. Successful hybridization of Megalobrama amblycephala (Blunt snout bream...

    Authors: Xue Ding, Yifei Zhang, Die Li, Jia Xu, Chang Wu, Xiaojuan Cui and Yuandong Sun
    Citation: BMC Genomic Data 2023 24:45
  25. The N6-methyladenosine (m6A) RNA modification is the most prevalent and abundant type found in eukaryotic cells. It plays a crucial role in the initiation and progression of cancers. In this study, we aimed to...

    Authors: Jian Ji, Shichao Liu, Yongyuan Liang and Guixi Zheng
    Citation: BMC Genomic Data 2023 24:44
  26. The chloroplast genome of plants is known for its small size and low mutation and recombination rates, making it a valuable tool in plant phylogeny, molecular evolution, and population genetics studies. Codon ...

    Authors: Yaqi Li, Xiang Hu, Mingkun Xiao, Jiaxiong Huang, Yuqiang Lou, Faguang Hu, Xingfei Fu, Yanan Li, Hongyan He and Jinhuan Cheng
    Citation: BMC Genomic Data 2023 24:42
  27. At present, donkey meat in the market shows an imbalance between supply and demand, and there is an urgent need to cultivate a meat-type Dezhou donkey breed. On the one hand, it can improve the imbalance in th...

    Authors: Xinrui Wang, Tianqi Wang, Huili Liang, Liyuan Wang, Faheem Akhtar, Xiaoyuan Shi, Wei Ren, Bingjian Huang, Xiyan Kou, Yinghui Chen, Yandong Zhan and Changfa Wang
    Citation: BMC Genomic Data 2023 24:41
  28. Essential thrombocythemia (ET) is one of the most common types of Ph-negative myeloproliferative neoplasms, an infrequent group of blood cancers that arise from a CD34 + hematopoietic stem cell (HSC) in the bone ...

    Authors: Ana Guijarro-Hernández and José Luis Vizmanos
    Citation: BMC Genomic Data 2023 24:40
  29. This study was performed in the frame of a more extensive study dedicated to the integrated analysis of the single-cell transcriptome and chromatin accessibility datasets of peripheral blood mononuclear cells ...

    Authors: Xiao Wang, Yahui Gao, Cong-jun Li, Lingzhao Fang, George E. Liu, Xiuxin Zhao, Yuanpei Zhang, Gaozhan Cai, Guanghui Xue, Yan Liu, Lingling Wang, Fan Zhang, Kun Wang, Miao Zhang, Rongling Li, Yundong Gao…
    Citation: BMC Genomic Data 2023 24:39
  30. The frequency of droughts has dramatically increased over the last 50 years, causing yield declines in cereals, including wheat. Crop varieties with efficient root systems show great potential for plant adapta...

    Authors: Nurealam Siddiqui, Melesech T. Gabi, Mohammad Kamruzzaman, Abebaw M. Ambaw, Tesfaye J. Teferi, Said Dadshani, Jens Léon and Agim Ballvora
    Citation: BMC Genomic Data 2023 24:38
  31. The Golden2-like (GLK) transcription factors are plant-specific transcription factors (TFs) that perform extensive and significant roles in regulating chloroplast development. Here, genome-wide identification, cl...

    Authors: Ruihua Wu, Lin Guo, Yueyang Guo, Lehang Ma, Kehang Xu, Boyu Zhang and Liang Du
    Citation: BMC Genomic Data 2023 24:37
  32. Inborn error of immunity (IEI) comprises a broad group of inherited immunological disorders that usually display an overlap in many clinical manifestations challenging their diagnosis. The identification of di...

    Authors: Cristina Santos Ferreira, Ronaldo da Silva Francisco Junior, Alexandra Lehmkuhl Gerber, Ana Paula de Campos Guimarães, Flávia Anisio Amendola, Fernanda Pinto-Mariz, Monica Soares de Souza, Patrícia Carvalho Batista Miranda, Zilton Farias Meira de Vasconcelos, Ekaterini Simões Goudouris and Ana Tereza Ribeiro Vasconcelos
    Citation: BMC Genomic Data 2023 24:36
  33. A haplotype is a set of DNA variants inherited together from one parent or chromosome. Haplotype information is useful for studying genetic variation and disease association. Haplotype assembly (HA) is a proce...

    Authors: Shuying Sun, Flora Cheng, Daphne Han, Sarah Wei, Alice Zhong, Sherwin Massoudian and Alison B. Johnson
    Citation: BMC Genomic Data 2023 24:35
  34. Evidence shows that genetic factors play important roles in the severity of coronavirus disease 2019 (COVID-19). Sulfatase modifying factor 1 (SUMF1) gene is involved in alveolar damage and systemic inflammatory ...

    Authors: Shaohui Liang, Huixia Gao, Tongxin He, Li Li, Xin Zhang, Lei Zhao, Jie Chen, Yanyan Xie, Jie Bao, Yong Gao, Erhei Dai and Yuling Wang
    Citation: BMC Genomic Data 2023 24:34
  35. Complex physiological adaptations often involve the coordination of molecular responses across multiple tissues. Establishing transcriptomic resources for non-traditional model organisms with phenotypes of int...

    Authors: Blair W. Perry, Michael W. Saxton, Heiko T. Jansen, Corey R. Quackenbush, Brandon D. Evans Hutzenbiler, Charles T. Robbins, Joanna L. Kelley and Omar E. Cornejo
    Citation: BMC Genomic Data 2023 24:33
  36. Considering the co-morbidity of major psychiatric disorders and intelligence with smoking, to increase our understanding of why some people take up smoking or continue to smoke, while others stop smoking witho...

    Authors: Olesya Ajnakina and Andrew Steptoe
    Citation: BMC Genomic Data 2023 24:31
  37. Allele counts of sequence variants obtained by whole genome sequencing (WGS) often play a central role in interpreting the results of genetic and genomic research. However, such variant counts are not readily ...

    Authors: Karina Banasik, Peter L. Møller, Tanya R. Techlo, Peter C. Holm, G. Bragi Walters, Andrés Ingason, Anders Rosengren, Palle D. Rohde, Lisette J. A. Kogelman, David Westergaard, Troels Siggaard, Piotr J. Chmura, Mona A. Chalmer, Ólafur Þ. Magnússon, Guðmundur Á. Þórisson, Hreinn Stefánsson…
    Citation: BMC Genomic Data 2023 24:30
  38. This report provides information about the public release of the 2018–2019 Maize G X E project of the Genomes to Fields (G2F) Initiative datasets. G2F is an umbrella initiative that evaluates maize hybrids and...

    Authors: Dayane Cristina Lima, Alejandro Castro Aviles, Ryan Timothy Alpers, Bridget A. McFarland, Shawn Kaeppler, David Ertl, Maria Cinta Romay, Joseph L. Gage, James Holland, Timothy Beissinger, Martin Bohn, Edward Buckler, Jode Edwards, Sherry Flint-Garcia, Candice N. Hirsch, Elizabeth Hood…
    Citation: BMC Genomic Data 2023 24:29
  39. Polygenic scores (PGSs) combining genetic variants found to be associated with creatinine-based estimated glomerular filtration rate (eGFRcrea) have been applied in various study populations with different age ra...

    Authors: Janina M. Herold, Jana Nano, Mathias Gorski, Thomas W. Winkler, Kira J. Stanzick, Martina E. Zimmermann, Caroline Brandl, Annette Peters, Wolfgang Koenig, Ralph Burkhardt, André Gessner, Iris M. Heid, Christian Gieger and Klaus J. Stark
    Citation: BMC Genomic Data 2023 24:28
  40. With the release of genomic data for B.rapa, B.oleracea, and B.napus, research on the genetic and molecular functions of Brassica spp. has entered a new stage. PEBP genes in plants play an important role in the t...

    Authors: Yanling Li, Lu Xiao, Zhi Zhao, Hongping Zhao and Dezhi Du
    Citation: BMC Genomic Data 2023 24:27
  41. HostSeq was launched in April 2020 as a national initiative to integrate whole genome sequencing data from 10,000 Canadians infected with SARS-CoV-2 with clinical information related to their disease experienc...

    Authors: S Yoo, E Garg, LT Elliott, RJ Hung, AR Halevy, JD Brooks, SB Bull, F Gagnon, CMT Greenwood, JF Lawless, AD Paterson, L Sun, MH Zawati, J Lerner-Ellis, RJS Abraham, I Birol…
    Citation: BMC Genomic Data 2023 24:26
  42. Recently, deep neural networks have been successfully applied in many biological fields. In 2020, a deep learning model AlphaFold won the protein folding competition with predicted structures within the error ...

    Authors: Katarína Grešová, Vlastimil Martinek, David Čechák, Petr Šimeček and Panagiotis Alexiou
    Citation: BMC Genomic Data 2023 24:25
  43. Gastric cancer (GC) is the fourth most common cancer worldwide, with the highest incidence and mortality regardless of sex. Despite technological advances in diagnosing and treating gastric cancer, GC still ha...

    Authors: Eun-Hye Seo, Yun-Jae Shin, Hee-Jin Kim, Jeong-Hwan Kim, Yong Sung Kim and Seon-Young Kim
    Citation: BMC Genomic Data 2023 24:24
  44. As part of a research aiming at presenting an alternative approach for rapid determination of antimicrobial susceptibility by quantification of changes in expression levels of specific marker genes and gene se...

    Authors: Galia Zaide, Inbar Cohen-Gihon, Ohad Shifman, Ofir Israeli, Moshe Aftalion, Sharon Maoz, Theodor Chitlaru, Raphael Ber, Anat Zvi and Ida Steinberger-Levy
    Citation: BMC Genomic Data 2023 24:23
  45. Previous reports revealed that a history of major depressive disorder (MDD) increased the risk of Alzheimer’s disease (AD). The immune disorder is associated with MDD and AD pathophysiology. We aimed to identi...

    Authors: Jin Song, Zilong Ma, Huishi Zhang, Ting Liang and Jun Zhang
    Citation: BMC Genomic Data 2023 24:22

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