Reich D, Thangaraj K, Patterson N, Price AL, Singh L: Reconstructing Indian population history. Nature. 2009, 461 (7263): 489-494.
Article
PubMed
CAS
PubMed Central
Google Scholar
Indian Genome Variation Consortium: Genetic landscape of the people of India: a canvas for disease gene exploration. J Genet. 2008, 87 (1): 3-20.
Article
Google Scholar
Bamshad M, Kivisild T, Watkins WS, Dixon ME, Ricker CE, Rao BB, Naidu JM, Prasad BV, Reddy PG, Rasanayagam A, Papiha SS, Villems R, Redd AJ, Hammer MF, Nguyen SV, Carroll ML, Batzer MA, Jorde LB: Genetic evidence on the origins of Indian caste populations. Genome Res. 2001, 11 (6): 994-1004.
Article
PubMed
CAS
PubMed Central
Google Scholar
Xing J, Watkins WS, Hu Y, Huff CD, Sabo A, Muzny DM, Bamshad MJ, Gibbs RA, Jorde LB, Yu F: Genetic diversity in India and the inference of Eurasian population expansion. Genome Biol. 2010, 11 (11): R113-
Article
PubMed
CAS
PubMed Central
Google Scholar
Mitchell RJ, Reddy BM, Campo D, Infantino T, Kaps M, Crawford MH: Genetic diversity within a caste population of India as measured by Y-chromosome haplogroups and haplotypes: subcastes of the Golla of Andhra Pradesh. Am J Phys Anthropol. 2006, 130 (3): 385-393.
Article
PubMed
Google Scholar
Krithika S, Trivedi R, Kashyap VK, Vasulu TS: Genetic diversity at 15 microsatellite loci among the Adi Pasi population of Adi tribal cluster in Arunachal Pradesh, India. Leg Med (Tokyo). 2005, 7 (5): 306-310.
Article
CAS
Google Scholar
Majumder PP: The human genetic history of South Asia. Curr Biol. 2010, 20 (4): R184-R187.
Article
PubMed
CAS
Google Scholar
Palanichamy MG, Sun C, Agrawal S, Bandelt HJ, Kong QP, Khan F, Wang CY, Chaudhuri TK, Palla V, Zhang YP: Phylogeny of mitochondrial DNA macrohaplogroup N in India, based on complete sequencing: implications for the peopling of South Asia. Am J Hum Genet. 2004, 75 (6): 966-978.
Article
PubMed
CAS
PubMed Central
Google Scholar
Kumar S, Padmanabham PB, Ravuri RR, Uttaravalli K, Koneru P, Mukherjee PA, Das B, Kotal M, Xaviour D, Saheb SY, Rao VR: The earliest settlers' antiquity and evolutionary history of Indian populations: evidence from M2 mtDNA lineage. BMC Evol Biol. 2008, 8: 230-
Article
PubMed
PubMed Central
Google Scholar
Watkins WS, Thara R, Mowry BJ, Zhang Y, Witherspoon DJ, Tolpinrud W, Bamshad MJ, Tirupati S, Padmavati R, Smith H, Nancarrow D, Filippich C, Jorde LB: Genetic variation in South Indian castes: evidence from Y-chromosome, mitochondrial, and autosomal polymorphisms. BMC Genet. 2008, 9: 86-
Article
PubMed
CAS
PubMed Central
Google Scholar
Emeneau MB: India as a Lingustic Area. Language. 1956, 32 (1): 3-16.
Article
Google Scholar
Stokowski RP, Pant PV, Dadd T, Fereday A, Hinds DA, Jarman C, Filsell W, Ginger RS, Green MR, van der Ouderaa FJ, Cox DR: A genomewide association study of skin pigmentation in a South Asian population. Am J Hum Genet. 2007, 81 (6): 1119-1132.
Article
PubMed
CAS
PubMed Central
Google Scholar
Altshuler DM, Gibbs RA, Peltonen L, Dermitzakis E, Schaffner SF, Yu F, Bonnen PE, de Bakker PI, Deloukas P, Gabriel SB, Gwilliam R, Hunt S, Inouye M, Jia X, Palotie A, Parkin M, Whittaker P, Yu F, Chang K, Hawes A, Lewis LR, Ren Y, Wheeler D, Gibbs RA, Muzny DM, Barnes C, Darvishi K, Hurles M, Korn JM, Kristiansson K: Integrating common and rare genetic variation in diverse human populations. Nature. 2010, 467 (7311): 52-58.
Article
PubMed
CAS
Google Scholar
Teo YY, Sim X, Ong RT, Tan AK, Chen J, Tantoso E, Small KS, Ku CS, Lee EJ, Seielstad M, Chia KS: Singapore Genome Variation Project: a haplotype map of three Southeast Asian populations. Genome Res. 2009, 19 (11): 2154-2162.
Article
PubMed
CAS
PubMed Central
Google Scholar
Saw SH: The population of Singapore. 2007, Singapore: Institute of South East Asian Studies, 2
Google Scholar
Wright S: The genetical structure of populations. Ann Eugen. 1949, 15 (1): 323-354.
Article
Google Scholar
Voight BF, Kudaravalli S, Wen X, Pritchard JK: A map of recent positive selection in the human genome. PLoS Biol. 2006, 4 (3): e72-
Article
PubMed
PubMed Central
Google Scholar
Sabeti PC, Varilly P, Fry B, Lohmueller J, Hostetter E, Cotsapas C, Xie X, Byrne EH, McCarroll SA, Gaudet R, Schaffner SF, Lander ES, International HapMap C, Frazer KA, Ballinger DG, Cox DR, Hinds DA, Stuve LL, Gibbs RA, Belmont JW, Boudreau A, Hardenbol P, Leal SM, Pasternak S, Wheeler DA, Willis TD, Yu F, Yang H, Zeng C, Gao Y: Genome-wide detection and characterization of positive selection in human populations. Nature. 2007, 449 (7164): 913-918.
Article
PubMed
CAS
PubMed Central
Google Scholar
Suo C, Xu H, Khor CC, Ong RT, Sim X, Chen J, Tay WT, Sim KS, Zeng YX, Zhang X, Liu J, Tai ES, Wong TY, Chia KS, Teo YY: Natural positive selection and north–south genetic diversity in East Asia. Eur J Hum Genet. 2012, 20 (1): 102-110.
Article
PubMed
CAS
PubMed Central
Google Scholar
Mukherjee M, Mukerjee S, Sarkar-Roy N, Ghosh T, Kalpana D, Sharma AK: Polymorphisms of four pigmentation genes (SLC45A2, SLC24A5, MC1R and TYRP1) among eleven endogamous populations of India. J Genet. 2013, 92 (1): 135-139.
Article
PubMed
Google Scholar
Ikram MA, Fornage M, Smith AV, Seshadri S, Schmidt R, Debette S, Vrooman HA, Sigurdsson S, Ropele S, Taal HR, Mook-Kanamori DO, Coker LH, Longstreth WT, Niessen WJ, DeStefano AL, Beiser A, Zijdenbos AP, Struchalin M, Jack CR, Rivadeneira F, Uitterlinden AG, Knopman DS, Hartikainen AL, Pennell CE, Thiering E, Steegers EA, Hakonarson H, Heinrich J, Palmer LJ, Jarvelin MR: Common variants at 6q22 and 17q21 are associated with intracranial volume. Nat Genet. 2012, 44 (5): 539-544.
Article
PubMed
CAS
PubMed Central
Google Scholar
Do CB, Tung JY, Dorfman E, Kiefer AK, Drabant EM, Francke U, Mountain JL, Goldman SM, Tanner CM, Langston JW, Wojcicki A, Eriksson N: Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease. PLoS Genet. 2011, 7 (6): e1002141-
Article
PubMed
CAS
PubMed Central
Google Scholar
Spencer AH, Rickards H, Fasano A, Cavanna AE: The prevalence and clinical characteristics of punding in Parkinson's disease. Mov Disord. 2011, 26 (4): 578-586.
Article
PubMed
Google Scholar
Simon-Sanchez J, Scholz S, Matarin Mdel M, Fung HC, Hernandez D, Gibbs JR, Britton A, Hardy J, Singleton A: Genomewide SNP assay reveals mutations underlying Parkinson disease. Hum Mutat. 2008, 29 (2): 315-322.
Article
PubMed
CAS
Google Scholar
Twee-Hee Ong R, Wang X, Liu X, Teo YY: Efficiency of trans-ethnic genome-wide meta-analysis and fine-mapping. Eur J Hum Genet. 2012, 20 (12): 1300-1307.
Article
PubMed Central
Google Scholar
Lamason RL, Mohideen MA, Mest JR, Wong AC, Norton HL, Aros MC, Jurynec MJ, Mao X, Humphreville VR, Humbert JE, Sinha S, Moore JL, Jagadeeswaran P, Zhao W, Ning G, Makalowska I, McKeigue PM, O'donnell D, Kittles R, Parra EJ, Mangini NJ, Grunwald DJ, Shriver MD, Canfield VA, Cheng KC: SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans. Science. 2005, 310 (5755): 1782-1786.
Article
PubMed
CAS
Google Scholar
Giardina E, Pietrangeli I, Martinez-Labarga C, Martone C, de Angelis F, Spinella A, De Stefano G, Rickards O, Novelli G: Haplotypes in SLC24A5 Gene as Ancestry Informative Markers in Different Populations. Curr Genom. 2008, 9 (2): 110-114.
Article
CAS
Google Scholar
Béteille A: Race and Descent as Social Categories in India. Daedalus. 1967, 96 (2): 444-463.
Google Scholar
Thanseem I, Thangaraj K, Chaubey G, Singh VK, Bhaskar LV, Reddy BM, Reddy AG, Singh L: Genetic affinities among the lower castes and tribal groups of India: inference from Y chromosome and mitochondrial DNA. BMC Genet. 2006, 7: 42-
Article
PubMed
PubMed Central
Google Scholar
Mountain JL, Hebert JM, Bhattacharyya S, Underhill PA, Ottolenghi C, Gadgil M, Cavalli-Sforza LL: Demographic history of India and mtDNA-sequence diversity. Am J Hum Genet. 1995, 56 (4): 979-992.
PubMed
CAS
PubMed Central
Google Scholar
Metspalu M, Kivisild T, Metspalu E, Parik J, Hudjashov G, Kaldma K, Serk P, Karmin M, Behar DM, Gilbert MT, Endicott P, Mastana S, Papiha SS, Skorecki K, Torroni A, Villems R: Most of the extant mtDNA boundaries in south and southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans. BMC Genet. 2004, 5: 26-
Article
PubMed
PubMed Central
Google Scholar
Liu X, Ong RT, Pillai EN, Elzein AM, Small KS, Clark TG, Kwiatkowski DP, Teo YY: Detecting and Characterizing Genomic Signatures of Positive Selection in Global Populations. Am J Hum Genet. 2013, 92 (6): 866-881.
Article
PubMed
CAS
PubMed Central
Google Scholar
Basu Mallick C, Iliescu FM, Mols M, Hill S, Tamang R, Chaubey G, Goto R, Ho SY, Gallego Romero I, Crivellaro F, Hudjashov G, Rai N, Metspalu M, Mascie-Taylor CG, Pitchappan R, Singh L, Mirazon-Lahr M, Thangaraj K, Villems R, Kivisild T: The light skin allele of SLC24A5 in South Asians and Europeans shares identity by descent. PLoS Genet. 2013, 9 (11): e1003912-
Article
PubMed
PubMed Central
Google Scholar
Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, Reich D: Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet. 2006, 38 (8): 904-909.
Article
PubMed
CAS
Google Scholar
Pickrell JK, Coop G, Novembre J, Kudaravalli S, Li JZ, Absher D, Srinivasan BS, Barsh GS, Myers RM, Feldman MW, Pritchard JK: Signals of recent positive selection in a worldwide sample of human populations. Genome Res. 2009, 19 (5): 826-837.
Article
PubMed
CAS
PubMed Central
Google Scholar