Fire blight, The Foundation of Phytobacteriology. Edited by: Griffith CS, Sutton TB, Peterson PD. 2003, APS Press, St Paul, Minn
Google Scholar
Norelli JL, Jones AL, Aldwinckle HS: Fire blight management in the 21st century: using new technologies that enhance host resistance in apple. Plant Dis. 2003, 87: 756-765. 10.1094/PDIS.2003.87.7.756.
Google Scholar
Peil A, Bus VGM, Geider K, Richter K, Flachowsky H, Hanke M-V: Improvement of fire blight resistance in apple and pear. Int J Plant Breed. 2009, 3 (1): 1-27. 10.3923/ijpbg.2009.1.10.
Google Scholar
Roberts RG, Sawyer AJ: An updated pest risk assessment for spread ofErwinia amylovoraand fire blight via commercial apple fruit. Crop Prot. 2008, 27: 362-368. 10.1016/j.cropro.2007.06.007.
Google Scholar
USDA-National Institute of Food and Agriculture, Plant Breeding, Genetics, Genomics, Fire Blight Resistant Apples.[http://www.csrees.usda.gov/nea/plants/in_focus/pbgg_if_fire_blight_resistant_apples.html]
Loper JE, Henkels MD, Roberts RG, Grove GG, Willet MJ, Smith TJ: Evaluation of streptomycin, oxytetracycline, and copper resistance ofErwinia amylovoraisolated from pear orchards in Washington State. Plant Dis. 1991, 75: 287-290. 10.1094/PD-75-0287.
CAS
Google Scholar
McManus PS, Stockwell VO, Sundin GW, Jones AL: Antibiotic use in plant agriculture. Annu Rev Phytopathol. 2002, 40: 443-463. 10.1146/annurev.phyto.40.120301.093927.
CAS
PubMed
Google Scholar
Sholberg P, Bedford K, Haag P: Occurrence and control of streptomycin-resistantErwinia amylovorain British Columbia. Can J Plant Pathol. 2000, 22: 179-
Google Scholar
Jock S, Donat V, López MM, Bazzi C, Geider K: Following spread of fire blight in Western, Central and Southern Europe by molecular differentiation ofErwinia amylovorastrains with PFGE analysis. Environ Micro. 2002, 4: 106-114. 10.1046/j.1462-2920.2002.00277.x.
Google Scholar
Bonn WG, van der Zwet T: Distribution and economic importance of fire blight. Fire blight : the disease and its causative agent, Erwinia amylovora. Edited by: Vanneste J. 2000, CABI, Wallingford, 37-54.
Google Scholar
McManus PS, Jones AL: Genetic fingerprinting ofErwinia amylovorastrains isolated from tree-fruit crops andRubusspp. Phytopathology. 1995, 85: 1547-1553. 10.1094/Phyto-85-1547.
CAS
Google Scholar
Zang Y, Geider K: Differentiation ofErwinia amylovorastrains by pulsed-field gel electrophoresis. Appl Environ Microbiol. 1997, 63: 4421-4426.
Google Scholar
Peil A, Richter K, Garcia-Libreros T, Hanke V, Flachowsky H, Celton J-M, Horner M, Gardiner S, Bus V: Confirmation of the fire blight QTL ofMalusxrobusta5 on linkage group 3. Acta Hort. 2008, 793: 297-303.
CAS
Google Scholar
Parravicini G, Gessler C, Denancé C, Lasserre-Zuber P, Vergne E, Brisset M-N, Patocchi A, Durel C-E, Broggini GAL: Identification of serine/threonine kinase and nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes in the fire blight resistance quantitative trait locus of apple cultivar ‘Evereste’. Mol Plant Pathol. 2011, 10.1111/j.1364-3703.2010.00690.x.
Google Scholar
Norelli JL, Aldwinckle HS, Beer SV: Differential host pathogen interactions among cultivars of apple and strains ofErwinia amylovora. Phytopathology. 1984, 74: 136-139. 10.1094/Phyto-74-136.
Google Scholar
Norelli JL, Aldwinckle HS, Beer SV: Differential susceptibility ofMalusspp. Cultivars Robusta 5, Novole, and Ottawa 523 toErwinia amylovora. Plant Dis. 1986, 70: 1017-1019. 10.1094/PD-70-1017.
Google Scholar
Paulin JP, Lachaud G, Lespinasse Y: Role of the aggressiveness of strains ofErwinia amylovorain the experimental evaluation of susceptibility of apple cultivars to fire blight. Acta Hort. 1993, 338: 375-376.
Google Scholar
Fazio G, Aldwinckle HS, McQuinn RP, Robinson TL: Differential susceptibility to fire blight in commercial and experimental apple rootstock cultivars. Acta Hort. 2006, 704: 527-530.
Google Scholar
Gardiner SE, Bus VGM, Rusholme RL, Chagné D, Rikkerink EHA: Apple. Genome Mapping and Molecular Breeding in Plants 4, Fruits and Nuts. Edited by: Kole C. 2007, Springer-Verlag, Berlin, 1-62.
Google Scholar
Khan MA, Duffy B, Gessler C, Patocchi A: QTL mapping of fire blight resistance in apple. Mol Breed. 2006, 17: 299-306. 10.1007/s11032-006-9000-y.
Google Scholar
Khan MA, Durel C-E, Duffy B, Drouet D, Kellerhals M, Gessler C, Patocchi A: Development of molecular markers linked to the 'Fiesta' linkage group 7 major QTL for fire blight resistance and their application for marker-assisted selection. Genome. 2007, 50: 568-577. 10.1139/G07-033.
CAS
PubMed
Google Scholar
Peil A, Garcia-Libreros T, Richter K, Trognitz FC, Trognitz B, Hanke M-V, Flachowsky H: Strong evidence for a fire blight resistance gene ofMalus robustalocated on linkage group 3 detected by rapid genome scanning. Plant Breed. 2007, 126: 470-476. 10.1111/j.1439-0523.2007.01408.x.
CAS
Google Scholar
Calenge F, Drouet D, Denancé C, van de Weg WE, Brisset MN, Paulin J-P, Durel C-E: Identification of a major QTL together with several minor additive or epistatic QTLs for resistance to fire blight in apple in two related progenies. Theor Appl Genet. 2005, 111: 128-135. 10.1007/s00122-005-2002-z.
CAS
PubMed
Google Scholar
Le Roux P-MF, Khan MA, Broggini B, Duffy C, Gessler C, Patocchi A: Mapping of quantitative trait loci for fire blight resistance in the apple cultivars ‘Florina’ and ‘Nova Easygro’. Genome. 2010, 53: 710-722. 10.1139/G10-047.
CAS
PubMed
Google Scholar
Durel CE, Denancé C, Brisset MN: Two distinct major QTL for resistance to fire blight co-localize on linkage group 12 in apple genotypes ‘Evereste’ andMalus floribundaclone 821. Genome. 2009, 52: 139-147. 10.1139/G08-111.
CAS
PubMed
Google Scholar
Dunemann F, Peil A, Urbanietz A, Garcia-Liberos T: Mapping of the apple powdery mildew resistance gene Pl1 and its genetic association with a NBS-LRR candidate resistance gene. Plant Breed. 2007, 126: 476-481. 10.1111/j.1439-0523.2007.01415.x.
CAS
Google Scholar
Durel CE, van de Weg WE, Vennisse JS, Parisi L: Localisation of a major gene for apple scab resistance on the European genetic map of the Prima x Fiesta cross. IOBC wprs Bull. 2000, 23: 245-246.
Google Scholar
Cummins JN, Aldwinckle HS: Breeding apple rootstocks. Plant Breed Rev. 1983, 1: 294-394.
Google Scholar
Fahrentrapp J, Broggini GAL, Gessler C, Peil A, Kellerhals M, Malnoy M, Richter K: Fine mapping of fire blight resistance locus inMalusxrobusta5 on linkage group 3. Acta Hort. 2011, 896: 243-244.
Google Scholar
Fazio G, Wan Y, Russo NL, Aldwinckle HS: Investigation on the inheritance of strain specific resistance toErwinia amylovorain an apple rootstock segregating population. Acta Hort. 2008, 793: 331-335.
Google Scholar
Arùs P, Gardiner S: Genomics for improvement of Rosaceae temperate tree fruit. Genomics-Assisted Crop Improvement. Edited by: Varshney R, Tuberosa R. 2008, Springer, New York, 357-398.
Google Scholar
Espley RV, Hellens RP, Putterill J, Stevenson DE, Kutty-Amma1 S, Allan AC: Red colouration in apple fruit is due to the activity of the MYB transcription factor,MdMYB10. Plant J. 2007, 49: 414-427. 10.1111/j.1365-313X.2006.02964.x.
PubMed Central
CAS
PubMed
Google Scholar
Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R: The genome of the domesticated apple (Malusxdomestica). Nat Genet. 2010, 42: 833-839. 10.1038/ng.654.
CAS
PubMed
Google Scholar
Bus VGM, Esmenjaud D, Buck E, Laurens F: Application of genetic markers in rosaceous crops. Genetics and Genomics of the Rosaceae. Edited by: Folta KM, Gardiner SE. 2009, Springer, New York, 563-600.
Google Scholar
Chagné D, Carlisle CM, Blond C, Volz R, Whitworth CJ, Oraguzie NC, Crowhurst RN, Allan AC, Espley RV, Hellens RP, Gardiner SE: Mapping a candidate gene (MDMYB10) for red flesh and foliage colour in apple. BMC Genomics. 2007, 8: 212-10.1186/1471-2164-8-212.
PubMed Central
PubMed
Google Scholar
Peace C, Norelli JL: Genomics approaches to crop improvement in the Rosaceae. Genetics and Genomics of the Rosaceae. Edited by: Folta KM, Gardiner SE. 2009, Springer, New York, 19-53.
Google Scholar
Chisholm ST, Coaker G, Day B, Staskawica BJ: Host-microbe interactions: Shaping the evolution of the plant immune response. Cell. 2006, 124: 803-814. 10.1016/j.cell.2006.02.008.
CAS
PubMed
Google Scholar
Jones JDG, Dangl JL: The plant immune system. Nature. 2006, 444: 323-329. 10.1038/nature05286.
CAS
PubMed
Google Scholar
Thilmony R, Underwood W, He SY: Genome-wide transcriptional analysis of the Arabidopsis thaliana interaction with the plant pathogen Pseudomonas syringae pv. tomato DC3000 and the human pathogen Escherichia coli O157:H7. Plant J. 2006, 46: 34-53. 10.1111/j.1365-313X.2006.02725.x.
CAS
PubMed
Google Scholar
Truman W, Torres de Zabala M, Grant M: Type III effectors orchestrate a complex interplay between transcriptional networks to modify basal defence responses during pathogenesis and resistance. Plant J. 2006, 46: 14-33. 10.1111/j.1365-313X.2006.02672.x.
CAS
PubMed
Google Scholar
Norelli JL, Farrell RE, Bassett CL, Baldo AM, Lalli DA, Aldwinckle HS, Wisniewski ME: Rapid transcriptional response of apple to fire blight disease revealed by cDNA suppression subtractive hybridization analysis. Tree Genet Genomes. 2009, 5: 27-40. 10.1007/s11295-008-0164-y.
Google Scholar
Baldo A, Norelli JL, Farrell RE, Bassett CL, Aldwinckle HS, Malnoy M: Identification of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malusxdomestica) withErwinia amylovora. BMC Plant Biol. 2010, 10: 1-10.1186/1471-2229-10-1.
PubMed Central
PubMed
Google Scholar
Newcomb RD, Crowhurst RN, Gleave AP, Dickering EHA, Allan AC, Beuning LL, Bowen JH, Gera E, Jamieson KR, Janssen BJ, Laing WA, McArtney S, Nain B, Ross GS, Snowden KC, Souleyre EJ, Walton EF, Yauk YK: Analyses of expressed sequence tags from apple. Plant Physiol. 2006, 141: 147-166. 10.1104/pp.105.076208.
PubMed Central
PubMed
Google Scholar
Bus V, Rikkerink E, Aldwinckle HS, Caffier V, Durel C-E, Gardiner S, Gessler C, Groenwold R, Laurens F, Le Cam B, Luby J, Meulenbroek B, Kellerhals M, Parisi L, Patocchi A, Plummer K, Schouten HJ, Tartarini S, van de Weg E: A proposal for the nomenclature ofVenturia inaequalisraces. Acta Hort. 2009, 814: 739-746.
Google Scholar
Gygax M, Gianfranceschi L, Liebhard R, Kellerhals M, Gessler C, Patocchi A: Molecular markers linked to the apple scab resistance geneVbjderived fromMalus baccata jackii. Theor Appl Genet. 2004, 109: 1702-1709. 10.1007/s00122-004-1803-9.
CAS
PubMed
Google Scholar
Vinatzer BA, Patocchi A, Tartarini S, Gianfranceschi L, Sansavini S, Gessler C: Isolation of two microsatellite markers from BAC clones of theVfscab resistance region and molecular characterization of scab-resistant accessions inMalusgermplasm. Plant Breed. 2004, 123: 321-326. 10.1111/j.1439-0523.2004.00973.x.
CAS
Google Scholar
Gasic K, Gonzalez DO, Thimmapuram J, Liu L, Malnoy M, Gong G, Han Y, Vodkin LO, Aldwinckle HS, Carroll NJ, Orvis KS, Goldsbrough P, Clifton S, Pape D, Fulton L, Martin J, Theising B, Wisniewski ME, Fazio G, Feltus FA, Korban SS: Comparative analysis and functional annotation of a large expressed sequence tag collection of apple. Plant Genome. 2009, 2: 23-38. DOI 10.1007/s11295-012-0492-9.
CAS
Google Scholar
Celton J-M, Tustin DS, Chagné D, Gardiner SE: Construction of a dense genetic linkage map for apple rootstocks using SSRs developed fromMalusESTs andPyrusgenomic sequences. Tree Genet Genomes. 2009, 5: 93-107. 10.1007/s11295-008-0171-z.
Google Scholar
Chagné D, Gasic K, Crowhurst RN, Han Y, Bassett HCM, Bowatte DR, Lawrence TJ, Rikkerink EHA, Gardiner SE, Korban SS: Development of a set of SNP markers present in expressed genes of apple. Genomics. 2008, 92: 353-358. 10.1016/j.ygeno.2008.07.008.
PubMed
Google Scholar
Lander ES, Botstein : Mapping Mendelian factors underlying quantitative traits. Genetics. 1989, 121: 185-199.
PubMed Central
CAS
PubMed
Google Scholar
Jansen RC: Interval mapping of multiple quantitative trait loci. Genetics. 1993, 135: 205-211.
PubMed Central
CAS
PubMed
Google Scholar
Zeng Z: Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci. Proc Natl Acad Sci U S A. 1993, 90: 10972-10976. 10.1073/pnas.90.23.10972.
PubMed Central
CAS
PubMed
Google Scholar
Main Bioinformatics Laboratory, Washington State University: Genome Database for the Rosaceae. Malus. Assembly V4 Project Description http://www.rosaceae.org/bio/content/?title=&url=%2Fcgi-bin%2Fgdr%2Fgdr_unigeneV4_project_description.cgi%3Fgenus%3Dmalus
The Institute for Genomic Research (TIGR) Plant Transcript Assemblies: J. Craig Venter Institute, Rockville MD and La Jolla CA. [http://plantta.jcvi.org/cgi-bin/plantta_release.pl]
Tognolli M, Penel C, Greppin H, Simon P: Analysis and expression of the class III peroxidase large gene family inArabidopsis thaliana. Gene. 2002, 288: 129-138. 10.1016/S0378-1119(02)00465-1.
CAS
PubMed
Google Scholar
Welinder KG, Justesen AF, Kjaersgård IVH, Jensen RB, Rasmussen SK, Jespersen HM, Duroux L: Structural diversity and transcription of class III peroxidases from Arabidopsis thaliana. Eur J Biochem. 2002, 269: 6063-6081. 10.1046/j.1432-1033.2002.03311.x.
CAS
PubMed
Google Scholar
Passardi F, Longet D, Tenel C, Dunand C: The class III peroxidase multigenic family in rice and its evolution in land plants. Phytochemistry. 2004, 65: 1879-1893. 10.1016/j.phytochem.2004.06.023.
CAS
PubMed
Google Scholar
Bakalovic N, Passardi F, Ioannidis V, Cosio C, Penel C, Falquet L, Dunand C: PeroxiBase: A class III plant peroxidase database. Phytochemistry. 2006, 67: 534-539. 10.1016/j.phytochem.2005.12.020.
CAS
PubMed
Google Scholar
Bindschedler LV, Dewdney J, Blee KA, Stone JM, Asai T, Plotnikov J, Denoux C, Hayes T, Gerrish C, Davies DR, Ausubel FM, Bolwell GP: Peroxidase-dependent apoplastic oxidative burst in Arabidopsis required for pathogen resistance. Plant J. 2006, 47: 851-863. 10.1111/j.1365-313X.2006.02837.x.
PubMed Central
CAS
PubMed
Google Scholar
Johrde A, Schweizer P: A class III peroxidase specifically expressed in pathogen-attacked barley epidermis contributes to basal resistance. Mol Plant Pathol. 2008, 9: 687-696. 10.1111/j.1364-3703.2008.00494.x.
CAS
PubMed
Google Scholar
Venisse J-S, Gullner G, Brisset M-N: Evidence for the involvement of an oxidative stress in the initiation of infection of pear byErwinia amylovora. Plant Physiol. 2001, 125: 2164-2172. 10.1104/pp.125.4.2164.
PubMed Central
CAS
PubMed
Google Scholar
Venisse J-S, Malnoy M, Faize M, Paulin J-P, Brisset M-N: Modulation of defense responses ofMalusspp. during compatible and incompatible interactions withErwinia amylovora. Mol Plant Microbe Interact. 2002, 15: 1204-1212. 10.1094/MPMI.2002.15.12.1204.
CAS
PubMed
Google Scholar
Kobe B, Kajava AV: The leucine-rich repeat as a protein recognition motif. Curr Opin Struct Biol. 2001, 11: 725-732. 10.1016/S0959-440X(01)00266-4.
CAS
PubMed
Google Scholar
Kinoshita T, Caño-Delgado A, Seto H, Hiraruma S, Fujioka S, Yoshida S, Chory J: Binding of brassinosteroids to the extracellular domain of plant receptor kinase BRI1. Plant J. 2005, 44: 25-36. 10.1111/j.1365-313X.2005.02508.x.
Google Scholar
Takken FLW, Tameling WIL: To nibble at plant resistance proteins. Science. 2009, 324: 744-746. 10.1126/science.1171666.
CAS
PubMed
Google Scholar
Nürnberger T, Kemmerling B: Receptor protein kinases: pattern recognition receptors in plant immunity. Trends Plant Sci. 2006, 11: 519-522. 10.1016/j.tplants.2006.09.005.
PubMed
Google Scholar
Shiu SH, Bleecker AB: Expansion of the receptor-like kinase/Pelle gene family and receptor-like proteins in Arabidopsis. Plant Physiol. 2003, 132: 530-543. 10.1104/pp.103.021964.
CAS
PubMed
Google Scholar
Kruijt M, De Kock MJD, de Wit PJGM: Receptor-like proteins involved in plant disease resistance. Mol Plant Pathol. 2005, 6: 85-97. 10.1111/j.1364-3703.2004.00264.x.
CAS
PubMed
Google Scholar
Wang G, Ellendorff U, Kemp B, Mansfield JW, Forsyth A, Mitchell K, Bastas K, Liu C-M, Woods-Tör A, Zipfel C, de Wit PJGM, Jones JDG, Tör M, Thomma BPHJ: A genome-wide functional investigation into the roles of receptor-like proteins inArabidopsis. Plant Physiol. 2008, 147: 503-551. 10.1104/pp.108.119487.
PubMed Central
CAS
PubMed
Google Scholar
Nakai K, Horton P: PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem Sci. 1999, 24: 34-36. 10.1016/S0968-0004(98)01336-X.
CAS
PubMed
Google Scholar
McGuffin LJ, Bryson K, Jones DT: The PSIPRED protein structure prediction server. Bioinformatics. 2000, 16: 404-405. 10.1093/bioinformatics/16.4.404.
CAS
PubMed
Google Scholar
Käll L, Krogh A, Sonnhammer E: An HMM posterior decoder for sequence feature prediction that includes homology information. Bioinformatics. 2005, 21 (Suppl 1): i251-i257. 10.1093/bioinformatics/bti1014.
PubMed
Google Scholar
TMpred - Prediction of Transmembrane Regions and Orientation.[http://www.ch.embnet.org/software/TMPRED_form.html],
Nugent T, Jones DT: Transmembrane protein topology prediction using support vector machines. BMC Bioinformatics. 2009, 10: 159-10.1186/1471-2105-10-159.
PubMed Central
PubMed
Google Scholar
Jones DA, Jones JDG: The role of leucine-rich repeat proteins in plant defences. Adv Bot Res. 1997, 24: 89-167.
Google Scholar
Belfanti E, Silfverberg-Dilworth E, Tartarini S, Patocchi A, Barbieri M, Zhu J, Vinatzer BA, Gainfranceschi L, Gessler C, Sansavini S: TheHcrVf2gene from a wild apple confers scab resistance to a transgenic cultivated variety. Proc Natl Acad Sci U S A. 2004, 101: 886-890. 10.1073/pnas.0304808101.
PubMed Central
CAS
PubMed
Google Scholar
Malnoy M, Xu M, Borejsza-Wysocka E, Korban SS, Aldwinckle HS: Two receptor-like genes,Vfa1andVfa2, confer resistance to the fungal pathogenVenturia inaequalisinciting apple scab disease. Mol Plant Microbe Interact. 2008, 21: 448-458. 10.1094/MPMI-21-4-0448.
CAS
PubMed
Google Scholar
Capriotti E, Fariselli P, Casadio R: I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. Nucl Acids Res. 2005, 33: W306-W310. 10.1093/nar/gki375.
PubMed Central
CAS
PubMed
Google Scholar
Bocsanczy AM, Phillips JG, Dardick CD, Korban SS, Bassett CL, Wisniewski ME, Norelli JL: Analysis of apple (Malus) responses to bacterial pathogens using an oligo microarray [abstract]. Phytopathology. 2009, 99: s514-
Google Scholar
Botër M, Amigues B, Peart J, Breuer C, Kadota Y, Casais C, Moore G, Kleanthous C, Ochsenbein F, Shirasu K, Guerois R: Structural and functional analysis of SGT1 reveals that its interaction with HSP90 is required for the accumulation of Rx, and R protein involved in plant immunity. Plant Cell. 2007, 19: 3791-3804. 10.1105/tpc.107.050427.
PubMed Central
PubMed
Google Scholar
Hubert DA, He Y, McNulty BC, Tornero P, Dangl JL: SpecificArabidopsisHSP90.2 alleles recapitulate RAR1 cochaperone function in plant NB-LRR disease resistance protein regulation. Proc Natl Acad Sci U S A. 2009, 106: 9556-9563. 10.1073/pnas.0904877106.
PubMed Central
CAS
PubMed
Google Scholar
Hubert DA, Tornero P, Belkhadir Y, Krishna P, Takahashi A, Shirasu K, DAngl JL: Cytosolic HSP90 associates with and modulates theArabidopsisRPM1 disease resistance protein. EMBO J. 2003, 22: 5679-5689. 10.1093/emboj/cdg547.
PubMed Central
CAS
PubMed
Google Scholar
Kawasaki T, Nam J, Boyes DC, Holt BF, Hubert DA, Wiig A, Dangl JL: A duplicated pair ofArabidopsisRING-finger E3 ligases contribute to the RPM1- and RPS2-mediated jypersensitive response. Plant J. 2005, 44: 258-270. 10.1111/j.1365-313X.2005.02525.x.
CAS
PubMed
Google Scholar
Takahaski A, Casais C, Ichimura K, Shirasu K: HSP90 interacts with RAR1 and SGT1 and is essential for RSP2-mediated disease resistance inArabidopsis. Proc Natl Acad Sci U S A. 2003, 100: 11777-11782. 10.1073/pnas.2033934100.
Google Scholar
Belkhadir Y, Nimchuk Z, Hubert DA, Mackey D, Dangl JL: ArabidopsisRIN4 negatively regulates disease resistance mediated by RPS2 and RPM1 downstream or independent of the NDR1 signal modulator and is not required for the virulence functions of bacterial type III effectors AvrRpt2 or AvrRpm1. Plant Cell. 2004, 16: 2822-2835. 10.1105/tpc.104.024117.
PubMed Central
CAS
PubMed
Google Scholar
Mackey D, Holt BF, Wiig A, Dangl JL: RIN4 interacts withPseudomonas syringaetype III effector molecules and is required for RPM1-mediated resistance inArabidopsis. Cell. 2002, 108: 743-754. 10.1016/S0092-8674(02)00661-X.
CAS
PubMed
Google Scholar
Young JM, Fletcher MJ: International Collection of Micro-organisms from Plants, Catalogue Accessions 1–12989. Landcare Research, Auckland, NZ. [http://www.landcareresearch.co.nz/research/biosystematics/fungi/icmp97.pdf],
Fischer M, Fischer C: Evaluation ofMalusspecies and cultivars at the Fruit Genebank Dresden-Pillnitz and its use for apple resistance breeding. Genet Resour Crop Evol. 1999, 46: 235-241. 10.1023/A:1008652931035.
Google Scholar
Gharghani A, Zamani Z, Talaie T, Oraguzie NC, Fattahi R, Hajnajari H, Wiedow C, Gardiner SE: Genetic identity and relationships of Iranian apple (MalusxdomesticaBorkh) cultivars and landraces, wildMalusspecies and representative old apple cultivars based on simple sequence repeat (SSR) marker analysis. Genet Resour Crop Evol. 2009, 56: 849-852.
Google Scholar
Green P: Phred, Phrap, Consed. http://www.phrap.org/phredphrapconsed.html,
Mahalingam R, Gomez-Buitrago AM, Eckardt N, Shah N, Guevara-DEarcia A, Day P, Raina R, Federoff NV: Characterizing the stress/defense transcriptome of Arabidopsis. Genome Biology. 2003, http://genomebiology.com/2003/4/3/R20,
Google Scholar
Gianfranceschi L, Seglias N, Tarchini R, Komjanc M, Gessler C: Simple sequence repeats for the genetic analysis of apple. Theor Appl Genet. 1998, 96: 1069-1076. 10.1007/s001220050841.
CAS
Google Scholar
Van Ooijen JW, Voorrips E: JoinMap® 3.0, Software for the Calculation of Genetic Linkage Maps. Wageningen, the Netherlands: Plant Research International; 2001s
Broman KW, Wu H, Sen S, Churchill G: R/qtl: QTL mapping in experimental crosses. Bioinformatics. 2003, 19: 889-890. 10.1093/bioinformatics/btg112.
CAS
PubMed
Google Scholar
Haley C, Knott S: A simple regression method for mapping quantitative trait loci in line crosses using flanking markers. Heredity. 1992, 69: 315-324. 10.1038/hdy.1992.131.
CAS
PubMed
Google Scholar
Sen S, Churchill G: A statistical framework for quantitative trait mapping. Genetics. 2001, 159: 371-387.
PubMed Central
CAS
PubMed
Google Scholar
Churchill GA, Doerge RW: Empirical threshold values for quantitative trait mapping. Genetics. 1994, 138: 963-971.
PubMed Central
CAS
PubMed
Google Scholar
Broman KW: Mapping quantitative trait loci in the case of a spike in the phenotype distribution. Genetics. 2003, 163: 1169-1175.
PubMed Central
PubMed
Google Scholar
Wan Y, Fazio G, Baldo AM: A preliminary genetic map of apple rootstock. Plant Animal Genomes XV Conference [abstract]. 2007, http://www.intl-pag.org/15/abstracts/PAG15_P05h_456.html,
Google Scholar
Hall TA: BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser. 1999, 41: 95-98.
CAS
Google Scholar
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG: Clustal W and Clustal X version 2.0. Bioinformatics. 2007, 23: 2947-2948. 10.1093/bioinformatics/btm404.
CAS
PubMed
Google Scholar
Nicot N, Hausman J-F, Hoffmann L, Evers D: Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. J Exp Bot. 2005, 56: 2907-2914. 10.1093/jxb/eri285.
CAS
PubMed
Google Scholar
Livak KJ, Schmittgen TD: Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCtmethod. Methods. 2001, 25: 402-408. 10.1006/meth.2001.1262.
CAS
PubMed
Google Scholar
Troggio M, Gleave A, Salvi S, Chagné D, Cestaro AS, Kumar S, Crowhurst RN, Gardiner SE: Apple, from genome to breeding. Tree Genet Genomes. 10.1007/s11295-012-0492-9.
Kajava AV: Structural diversity of leucine-rich repeat proteins. J Mol Biol. 1998, 277: 519-527. 10.1006/jmbi.1998.1643.
CAS
PubMed
Google Scholar
Quamme HA, Bonn WG: Virulence ofErwinia amylovoraand its influence on the determination of fire blight resistance of pear cultivars and seedlings. Can J Plant Pathol. 1981, 3: 187-282. 10.1080/07060668109501345.
Google Scholar
Richter K, Fischer C: Stability of fire blight resistance in apple. Acta Hort. 2002, 590: 381-384.
Google Scholar
Seemüller EA, Beer SV: Absence of cell wall polysaccharide degradation byErwinia amylovora. Phytopathology. 1976, 66: 433-436. 10.1094/Phyto-66-433.
Google Scholar
Norelli JL, Aldwinckle HS, Beer SV: Virulence ofErwinia amylovorastrains toMalussp. Novole plants grown in vitro and in the greenhouse. Phytopathology. 1988, 78: 1292-1297. 10.1094/Phyto-78-1292.
Google Scholar