Heinrichs AJ, Losinger WC. Growth of Holstein dairy heifers in the United States. J Anim Sci. 1998;76:1254–60..
Article
CAS
PubMed
Google Scholar
Heinrichs AJ, Erb HN, Rogers GW, Cooper JB, Jones CM. Variability in Holstein heifer heart-girth measurements and comparison of prediction equations for live weight. Prev Vet Med. 2007;78:333–8.
Article
CAS
PubMed
Google Scholar
Lund T, Miglior F, Dekkers JCM, Burnside EB. Genetic relationships between clinical mastitis, somatic cell count, and udder conformation in Danish Holsteins. Livest Prod Sci. 1994;39:243–51.
Article
Google Scholar
Vollema AR, Van Der Beek S, Harbers AGF, De Jong G. Genetic evaluation for longevity of Dutch dairy bulls. J Dairy Sci. 2000;83:2629–39..
Article
CAS
PubMed
Google Scholar
Wu X, Fang M, Liu L, Wang S, Liu J, Ding X, et al. Genome wide association studies for body conformation traits in the Chinese Holstein cattle population. BMC Genomics. 2013;14:897.
Xia J, Qi X, Wu Y, Zhu B, Xu L, Zhang L, et al. Genome-wide association study identifies loci and candidate genes for meat quality traits in Simmental beef cattle. Mamm Genome. 2016;27:246–55.
Article
CAS
PubMed
Google Scholar
Pryce JE, Hayes BJ, Bolormaa S, Goddard ME. Polymorphic regions affecting human height also control stature in cattle. Genetics. 2011;187:981–4.
Article
PubMed
PubMed Central
Google Scholar
Silventoinen K, Magnusson PKE, Tynelius P, Kaprio J, Rasmussen F. Heritability of body size and muscle strength in young adulthood: a study of one million Swedish men. Genet Epidemiol. 2008;32:341–9.
Article
PubMed
Google Scholar
Zhang X, Chu Q, Guo G, Dong G, Li X, Zhang Q, et al. Genome-wide association studies identified multiple genetic loci for body size at four growth stages in Chinese Holstein cattle. PLoS One. 2017;12:e0175971.
Article
CAS
PubMed
PubMed Central
Google Scholar
Bouwman AC, Daetwyler HD, Chamberlain AJ, Ponce CH, Sargolzaei M, Schenkel FS, et al. Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals. Nat Genet. 2018;50:362–67.
Lesosky M, Dumas S, Conradie I, Handel IG, Jennings A, Thumbi S, et al. A live weight-heart girth relationship for accurate dosing of east African shorthorn zebu cattle. Trop Anim Health Prod. 2012;45:311–6.
Article
PubMed
PubMed Central
Google Scholar
Dechow CD, Rogers GW, Klei L, Lawlor TJ. Heritabilities and correlations among body condition score, dairy form and selected linear type traits. J Dairy Sci. 2010;86:2236–42.
Article
Google Scholar
Bardakcioglu HE, Sekkin S, Toplu HDO. Relationship between some teat and body measurements of Holstein cows and sub-clinical mastitis and milk yield. J Anim Vet Adv. 2011;10:1735–7.
Article
Google Scholar
Jiang L, Liu J, Sun D, Ma P, Ding X, Yu Y, et al. Genome wide association studies for milk production traits in Chinese Holstein population. PLoS One. 2010;5:e13661.
Meredith BK, Kearney FJ, Finlay EK, Bradley DG, Fahey AG, Berry DP, et al. Genome-wide associations for milk production and somatic cell score in Holstein-Friesian cattle in Ireland. BMC Genet. 2012;13:21.
Cole JB, Wiggans GR, Ma L, Sonstegard TS, Lawlor TJ, Crooker BA, et al. Genome-wide association analysis of thirty one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows. BMC Genomics. 2011;12:408.
Buzanskas ME, Grossi DA, Ventura RV, Schenkel FS, Sargolzaei M, Meirelles SLC, et al. Genome-wide association for growth traits in canchim beef cattle. PLoS One. 2014;9:e94802.
Jin B, Bao WJ, Wu ZQ, Xia XH. In situ monitoring of protein adsorption on a nanoparticulated gold film by attenuated total reflection surface-enhanced infrared absorption spectroscopy. Langmuir. 2012;28:9460–5.
Article
CAS
PubMed
Google Scholar
Huang W, Kirkpatrick BW, Rosa GJM, Khatib H. A genome-wide association study using selective DNA pooling identifies candidate markers for fertility in Holstein cattle. Anim Genet. 2010;41:570–8.
Article
CAS
PubMed
Google Scholar
Sahana G, Guldbrandtsen B, Bendixen C, Lund MS. Genome-wide association mapping for female fertility traits in Danish and Swedish Holstein cattle. Anim Genet. 2010;41:579–88.
Article
CAS
PubMed
Google Scholar
Sorbolini S, Bongiorni S, Cellesi M, Gaspa G, Dimauro C, Valentini A, et al. Genome wide association study on beef production traits in Marchigiana cattle breed. J Anim Breed Genet. 2017;134:43–8.
Article
CAS
PubMed
Google Scholar
Santana MHA, Utsunomiya YT, Neves HHR, Gomes RC, Garcia JF, Fukumasu H, et al. Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle. BMC Genet. 2014;15.
Jahuey-Martínez FJ, Parra-Bracamonte GM, Sifuentes-Rincón AM, Martínez-González JC, Gondro C, García-Pérez CA, et al. Genomewide association analysis of growth traits in charolais beef cattle. J Anim Sci. 2016;94:4570–82.
Article
PubMed
Google Scholar
Furlotte NA, Eskin E, Eyheramendy S. Genome-wide association mapping with longitudinal data. Genet Epidemiol. 2012;36:463–71.
Article
PubMed
PubMed Central
Google Scholar
Porter HF, O’Reilly PF. Multivariate simulation framework reveals performance of multi-trait GWAS methods. Sci Rep. 2017;7:38837.
Das K, Li J, Wang Z, Tong C, Fu G, Li Y, et al. A dynamic model for genome-wide association studies. Hum Genet. 2011;129:629–39.
Article
PubMed
PubMed Central
Google Scholar
Kim S, Xing EP. Statistical estimation of correlated genome associations to a quantitative trait network. PLoS Genet. 2009;5:e1000587.
Arnold K, Sarkar A, Yram MA, Polo JM, Bronson R, Sengupta S, et al. Sox2 + adult stem and progenitor cells are important for tissue regeneration and survival of mice. Cell Stem Cell. 2011;9:317–29.
Article
CAS
PubMed
PubMed Central
Google Scholar
Dekkers JCM. Commercial application of marker- and gene-assisted selection in livestock: Strategies and lessons1,2. J Anim Sci. 2004;82(suppl_13):E313–28. https://doi.org/10.2527/2004.8213_supplE313x.
Article
PubMed
Google Scholar
Guo Y, Huang Y, Hou L, Ma J, Chen C, Ai H, et al. Genome-wide detection of genetic markers associated with growth and fatness in four pig populations using four approaches. Genet Sel Evol. 2017;49:21.
Yi G, Shen M, Yuan J, Sun C, Duan Z, Qu L, et al. Genome-wide association study dissects genetic architecture underlying longitudinal egg weights in chickens. BMC Genomics. 2015;16:746.
Chen S, Li X, Lu D, Xu Y, Mou W, Wang L, et al. SOX2 regulates apoptosis through MAP 4K4-Survivin signaling pathway in human lung cancer cells. Carcinog. 2014;35:613–23.
Article
CAS
Google Scholar
Tani Y, Akiyama Y, Fukamachi H, Yanagihara K, Yuasa Y. Transcription factor SOX2 up-regulates stomach-specific pepsinogen a gene expression. J Cancer Res Clin Oncol. 2007;133:263–9.
Article
CAS
PubMed
Google Scholar
Pausch H, Flisikowski K, Jung S, Emmerling R, Edel C, Götz KU, et al. Genome-wide association study identifies two major loci affecting calving ease and growth-related traits in cattle. Genetics. 2011;187:289–97.
Article
CAS
PubMed
PubMed Central
Google Scholar
Luechtefeld R. A general-purpose collaborative system: Theory and design of the dialogic web. 2017. IEEE Technol Eng Manag Soc Conf TEMSCON. 2017;2017:455–9.
He M, Xu M, Zhang B, Liang J, Chen P, Lee JY, et al. Meta-analysis of genome-wide association studies of adult height in east Asians identifies 17 novel loci. Hum Mol Genet. 2015;24:1791–800.
Article
CAS
PubMed
Google Scholar
Lundeen EA, Stein AD, Adair LS, Behrman JR, Bhargava SK, Dearden KA, et al. Height-for-age z scores increase despite increasing height deficits among children in 5 developing countries. Am J Clin Nutr. 2014;100:821–5.
Article
CAS
PubMed
PubMed Central
Google Scholar
Liu R, Sun Y, Zhao G, Wang H, Zheng M, Li P, et al. Identification of loci and genes for growth related traits from a genome-wide association study in a slow- × fast-growing broiler chicken cross. Genes Genomics. 2015;37:829–36.
Article
CAS
Google Scholar
Hansen TH, Vestergaard H, Jørgensen T, Jørgensen ME, Lauritzen T, Brandslund I, et al. Impact of PTBP1 rs11085226 on glucose-stimulated insulin release in adult Danes. BMC Med Genet. 2015;16:17.
Article
CAS
PubMed
PubMed Central
Google Scholar
Meng Q, Wang K, Liu X, Zhou H, Xu L, Wang Z, et al. Identification of growth trait related genes in a Yorkshire purebred pig population by genome-wide association studies. Asian Australasian J Anim Sci. 2017;30:462–9.
Article
CAS
Google Scholar
Dunn AR, Stout KA, Ozawa M, Lohr KM, Hoffman CA, Bernstein AI, et al. Synaptic vesicle glycoprotein 2C (SV2C) modulates dopamine release and is disrupted in Parkinson disease. Proc Natl Acad Sci U S A. 2017;114:E2253–62.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zhou H, Mori S, Ishizaki T, Takahashi A, Matsuda K, Koretsune Y, et al. Genetic risk score based on the prevalence of vertebral fracture in Japanese women with osteoporosis. Bone Reports. 2016;5:168–72. https://doi.org/10.1016/j.bonr.2016.07.001.
Article
PubMed
PubMed Central
Google Scholar
Lee YS, Shin D, Song KD. Dominance effects of ion transport and ion transport regulator genes on the final weight and backfat thickness of landrace pigs by dominance deviation analysis. Genes Genomics. 2018;40:1331–8.
Article
CAS
PubMed
Google Scholar
Du M, Auer PL, Jiao S, Haessler J, Altshuler D, Boerwinkle E, et al. Whole-exome imputation of sequence variants identified two novel alleles associated with adult body height in African Americans. Hum Mol Genet. 2014;23:6607–15.
Article
CAS
PubMed
PubMed Central
Google Scholar
Borowska A, Reyer H, Wimmers K, Varley PF, Szwaczkowski T. Detection of pig genome regions determining production traits using an information theory approach. Livest Sci. 2017;205:31–5.
Article
Google Scholar
Wang L, Zhang L, Yan H, Liu X, Li N, Liang J, et al. Genome-wide association studies identify the loci for 5 exterior traits in a large white x Minzhu pig population. PLoS One. 2014;9:e103766.
Klomp HM, Steyerberg EW, Ubbink DT. Letter: systematic review and meta-analysis of controlled trials assessing spinal cord stimulation for inoperable critical leg ischaemia (Br J Surg 2004; 91: 948-955) [2] (multiple letters). Br J Surg. 2005;92:120–1.
Article
CAS
PubMed
Google Scholar
Andersson L, Haley CS, Ellegren H, Knott SA, Johansson M, Andersson K, et al. Genetic mapping of quantitative trait loci for growth and fatness in pigs. Science. 1994;263:1771–4.
Article
CAS
PubMed
Google Scholar
Kemper KE, Littlejohn MD, Lopdell T, Hayes BJ, Bennett LE, Williams RP, et al. Leveraging genetically simple traits to identify small-effect variants for complex phenotypes. BMC Genomics. 2016;17:858.
Jung EJ, Park HB, Lee JB, Yoo CK, Kim BM, Kim HI, et al. Genome-wide association study identifies quantitative trait loci affecting hematological traits in an F2intercross between landrace and Korean native pigs. Anim Genet. 2014;45:534–41.
Article
CAS
PubMed
Google Scholar
Yariz KO, Walsh T, Uzak A, Spiliopoulos M, Duman D, Onalan G, et al. Inherited mutation of the luteinizing hormone/choriogonadotropin receptor (LHCGR) in empty follicle syndrome. Fertil Steril. 2011;96:e125–30.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zhang Z, Hong Y, Gao J, Xiao S, Ma J, Zhang W, et al. Genome-wide association study reveals constant and specific loci for hematological traits at three time stages in a white Duroc × Erhualian F 2 resource population. PLoS One. 2013;8:e63665.
Nishi H, Arai H, Momiyama T. NCI-H295R, a human adrenal cortex-derived cell line, expresses Purinergic receptors linked to Ca2+−mobilization/influx and cortisol secretion. PLoS One. 2013;8:e71022.
Jia D, Jing Y, Zhang Z, Liu L, Ding J, Zhao F, et al. Amplification of MPZL1/PZR promotes tumor cell migration through Src-mediated phosphorylation of cortactin in hepatocellular carcinoma. Cell Res. 2014;24:204–17.
Article
CAS
PubMed
Google Scholar
Rask-Andersen M, Almén MS ällma., Lind L, Schiöth HB. Association of the LINGO2-related SNP rs10968576 with body mass in a cohort of elderly Swedes. Mol Genet Genomics. 2015;290:1485–1491.
Bryant EK, Dressen AS, Bunker CH, Hokanson JE, Hamman RF, Kamboh MI, et al. A multiethnic replication study of plasma lipoprotein levels-associated SNPs identified in recent GWAS. PLoS One. 2013;8:e63469.
Guo YM, Zhang ZY, Ma JW, Ai HS, Ren J, Huang LS. A genomewide association study of feed efficiency and feeding behaviors at two fattening stages in a white duroc × erhualian F2 population. J Anim Sci. 2015;93:1481–9.
Article
CAS
PubMed
Google Scholar
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D, et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet. 2007;81:559–75. https://doi.org/10.1086/519795.
Article
CAS
PubMed
PubMed Central
Google Scholar
Wang SB, Feng JY, Ren WL, Huang B, Zhou L, Wen YJ, et al. Improving power and accuracy of genome-wide association studies via a multi-locus mixed linear model methodology. Sci Rep. 2016;6:19444.
Zhang Z, Ersoz E, Lai CQ, Todhunter RJ, Tiwari HK, Gore MA, et al. Mixed linear model approach adapted for genome-wide association studies. Nat Genet. 2010;42:355–60.
Article
CAS
PubMed
PubMed Central
Google Scholar
Lipka AE, Tian F, Wang Q, Peiffer J, Li M, Bradbury PJ, et al. GAPIT: genome association and prediction integrated tool. Bioinformatics. 2012;28:2397–9.
Article
CAS
PubMed
Google Scholar
VanRaden PM. Efficient methods to compute genomic predictions. J Dairy Sci. 2008;91:4414–23.
Article
CAS
PubMed
Google Scholar
Nakagawa S. A farewell to Bonferroni: the problems of low statistical power and publication bias. Behav Ecol. 2004;15:1044–5.
Article
Google Scholar
Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B. 1995;57:289–300.
Google Scholar
Bolormaa S, Porto Neto LR, Zhang YD, Bunch RJ, Harrison BE, Goddard ME, et al. A genome-wide association study of meat and carcass traits in australian cattle. J Anim Sci. 2011;89:2297–309.
Article
CAS
PubMed
Google Scholar
Zhou X, Stephens M. Efficient multivariate linear mixed model algorithms for genome-wide association studies. Nat Methods. 2014;11:407–9.
Article
CAS
PubMed
PubMed Central
Google Scholar