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Table 1 List of suggestive candidate genes associated with six body size traits in Simmental beef cattle

From: Multiple association analysis of loci and candidate genes that regulate body size at three growth stages in Simmental beef cattle

GenesRelated SNPsBTAPosition (bp)MAFDistance (bp)p valueAssociated traits
P2RY1BovineHD01000327421115,755,0820.4079,6949.51E-06LONG-BH
BovineHD01000327421115,755,0820.4079,6941.54E-06LONG-HH
BovineHD01000327421115,755,0820.4079,6949.75E-06LONG-CS
BovineHD01000327451115,763,3340.4071,4421.99E-06LONG-HH
SLC37A1BovineHD01000416251144,414,9360.24within7.32E-08multi-trait18
BovineHD01000416301144,426,3640.24within7.32E-08multi-trait18
SOX2BTB-00037008186,134,4390.21200,0528.34E-06single-trait CS18
Hapmap44647-BTA-38494186,087,8190.19153,4323.58E-06single-trait CS18
SNRPD1BovineHD0200014364249,864,8110.20128,4129.22E-06single-trait HS18
BovineHD0200014365249,865,5040.25129,1052.11E-08single-trait HS18
BovineHD0200014365249,865,5040.24129,1054.06E-08multi-trait18
MPZL1BovineHD03000002303966,1590.38within7.60E-06LONG-BL
BTA-68271-no-rs3970,3860.42within8.93E-07LONG-BH
BTA-68271-no-rs3970,3860.42within6.64E-06LONG-HH
PCDH7BovineHD0600014096651,063,9860.00472,8774.90E-08multi-trait6
RASGEF1BBovineHD0600027173697,864,3700.15125,4388.09E-06single-trait HS12
BovineHD0600027180697,871,5950.15118,2134.49E-06single-trait HS12
BovineHD0600027330698,320,6920.10306,3579.24E-06single-trait HH6
LAP3Hapmap26308-BTC-057761638,576,0120.39within1.94E-08multi-trait12
PTBP1BovineHD0700012966745,003,9820.0212,3393.90E-07single-trait HH6
BovineHD0700012966745,003,9820.0212,3397.42E-06single-trait BH6
BovineHD0700012966745,003,9820.0212,3398.23E-13multi-trait6
EFNA5BovineHD07000340557107,333,0300.001,716,5601.84E-06single-trait HS12
BovineHD07000340557107,333,0300.001,716,5607.68E-06single-trait AS12
LINGO2BTB-01533287815,773,9210.31495,4447.98E-06LONH-HS
MANEABovineHD0900015135955,157,9810.01within5.01E-08multi-trait6
BovineHD0900015139955,177,6010.01within5.01E-08multi-trait6
SNX9BovineHD0900027283995,932,8140.23within5.18E-06single-trait BL12
SV2CBovineHD1000002378107,434,9700.35within4.16E-07single-trait BH6
BovineHD1000002378107,434,9700.35within2.99E-09multi-trait6
BovineHD1000002381107,437,2270.14within5.96E-08multi-trait6
PKDCCBovineHD11000073601124,440,4150.3089,2242.65E-06single-trait HS12
BovineHD11000073631124,458,3360.3071,3034.35E-06single-trait HS12
BovineHD11000073681124,473,6510.4955,9883.84E-06single-trait HS12
BovineHD11000073681124,473,6510.5055,9882.88E-08multi-trait12
BovineHD41000086411124,432,4160.2997,2234.62E-06single-trait HS12
LHCGRBovineHD11000091991130,836,0780.42within2.57E-08multi-trait12
BovineHD11000092051130,849,4060.43within4.07E-08multi-trait12
BovineHD11000092081130,866,8810.43within4.62E-08multi-trait12
BovineHD11000092111130,880,3590.43within4.07E-08multi-trait12
SYNDIG1BovineHD13000124891342,903,6650.4310,4851.06E-06single-trait BH18
BovineHD13000124891342,903,6650.4310,4856.31E-08multi-trait18
AKR1E2ARS-BFGL-NGS-58721344,206,8490.49within4.17E-09multi-trait18
BovineHD13000128901344,187,5040.5016,1323.20E-09multi-trait18
BovineHD13000128911344,188,7430.5014,8934.89E-09multi-trait18
BovineHD13000128941344,201,6250.4620118.08E-06single-trait AS18
BovineHD13000128941344,201,6250.4720113.84E-10multi-trait18
BovineHD13000128951344,202,9580.506784.65E-08multi-trait18
BovineHD13000128961344,203,6070.50296.37E-09multi-trait18
BovineHD13000128991344,205,5090.50within2.75E-09multi-trait18
BovineHD13000129001344,206,0160.49within4.18E-09multi-trait18
BovineHD13000129031344,209,7480.50within2.75E-09multi-trait18
BovineHD13000129051344,211,3390.49within2.62E-08multi-trait18
BovineHD13000129061344,212,3640.49within3.11E-09multi-trait18
BovineHD13000129071344,213,1010.48within5.66E-09multi-trait18
BovineHD13000129091344,217,1920.4829152.63E-08multi-trait18
CMIPBovineHD1800002818188,171,5540.4839,2615.92E-06LONG-HH
BovineHD1800002831188,197,5310.4313,2846.66E-06LONG-HH
BovineHD1800002834188,200,9060.4399095.72E-06LONG-HH
BovineHD1800002837188,203,4460.4373694.87E-06LONG-HH
WSCD1BovineHD19000078021926,316,7470.3731,1645.47E-06LONG-CS
PRIM2ARS-BFGL-NGS-59707232,570,2110.36within6.65E-06single-trait HH18
BovineHD2300000488232,589,0390.36within8.16E-06single-trait HH18
  1. Name of trait: BH body height; BL body length; HH hip height; HS heart size; AS abdominal size; CS cannon bone size
  2. Name of SNPs: Single nucleotide polymorphism name in the Bovine HD panel
  3. BTA Bos Taurus autosome
  4. MAF minor allele frequency
  5. Position: Position (bp) on UMD3.1
  6. Distance: distance between SNP and the nearest gene
  7. P value: p-values calculated from the mixed linear model analysis