Guan P, Lu L, Jia L, Kabir MR, Zhang J, Lan T, et al. Global QTL Analysis Identifies Genomic Regions on Chromosomes 4A and 4B Harboring Stable Loci for Yield-Related Traits Across Different Environments in Wheat (Triticum aestivum L.). Front Plant Sci. 2018;9:1–14.
Article
Google Scholar
Isham K, Wang R, Zhao W, Wheeler J, Klassen N, Akhunov E, et al. QTL mapping for grain yield and three yield components in a population derived from two high-yielding spring wheat cultivars. Theor Appl Genet. 2021;134:2079–95.
Article
CAS
PubMed
PubMed Central
Google Scholar
Li T, Deng G, Tang Y, Su Y, Wang J, Cheng J. Identification and Validation of a Novel Locus Controlling Spikelet Number in Bread Wheat ( Triticum aestivum L.). Front Plant Sci. 2021;12:1–14.
Google Scholar
Cui F, Ding A, Li J, Zhao C, Wang L, Wang X, et al. QTL detection of seven spike-related traits and their genetic correlations in wheat using two related RIL populations. Euphytica. 2012;186:177–92.
Article
Google Scholar
Ren T, Fan T, Chen S, Li C, Chen Y, Ou X, et al. Utilization of a Wheat55K SNP array-derived high-density genetic map for high-resolution mapping of quantitative trait loci for important kernel-related traits in common wheat. Theor Appl Genet. 2021;134:807–21.
Article
CAS
PubMed
Google Scholar
Wang J, Liu W, Wang H, Li L, Wu J, Yang X, et al. QTL mapping of yield-related traits in the wheat germplasm 3228. Euphytica. 2011;177:277–92.
Article
Google Scholar
Chu CG, Xu SS, Friesen TL, Faris JD. Whole genome mapping in a wheat doubled haploid population using SSRs and TRAPs and the identification of QTL for agronomic traits. Mol Breed. 2008;22:251–66.
Article
CAS
Google Scholar
Ellis MH, Spielmeyer W, Gale KR, Rebetzke GJ, Richards RA. “Perfect” markers for the Rht-B1b and Rht-D1b dwarfing genes in wheat. Theor Appl Genet. 2002;105:1038–42.
Article
CAS
PubMed
Google Scholar
Lv C, Song Y, Gao L, Yao Q, Zhou R, Xu R, et al. Integration of QTL detection and marker assisted selection for improving resistance to Fusarium head blight and important agronomic traits in wheat. Crop J. 2014;2:70–8.
Article
Google Scholar
Du Y, Chen L, Wang Y, Yang Z, Saeed I, Daoura BG, et al. The combination of dwarfing genes Rht4 and Rht8 reduced plant height, improved yield traits of rainfed bread wheat (Triticum aestivum L.). F Crop Res. 2018;215:149–55.
Article
Google Scholar
Fan X, Cui F, Ji J, Zhang W, Zhao X, Liu JJ, et al. Dissection of pleiotropic QTL regions controlling wheat spike characteristics under different nitrogen treatments using traditional and conditional QTL mapping. Front Plant Sci. 2019;10:1–13.
Article
Google Scholar
Zhai H, Feng Z, Li J, Liu X, Xiao S, Ni Z, et al. QTL analysis of spike morphological traits and plant height in winter wheat (Triticum aestivum L.) using a high-density SNP and SSR-based linkage map. Front. Plant Sci. 2016;7:1–13.
Google Scholar
Cheng X, Xin M, Xu R, Chen Z, Cai W, Chai L, et al. A single amino acid substitution in STKc_GSK3 kinase conferring semispherical grains and its implications for the origin of triticum sphaerococcum. Plant Cell. 2020;32:923–34.
Article
CAS
PubMed
PubMed Central
Google Scholar
Chen Y, Yan Y, Wu TT, Zhang GL, Yin H, Chen W, et al. Cloning of wheat keto-acyl thiolase 2B reveals a role of jasmonic acid in grain weight determination. Nat Commun. 2020;11:6266.
Article
CAS
PubMed
PubMed Central
Google Scholar
Dobrovolskaya O, Pont C, Sibout R, Martinek P, Badaeva E, Murat F, et al. Frizzy panicle drives supernumerary spikelets in bread wheat. Plant Physiol. 2015;167:189–99.
Article
CAS
PubMed
Google Scholar
Voss-Fels KP, Keeble-Gagnère G, Hickey LT, Tibbits J, Nagornyy S, Hayden MJ, et al. High-resolution mapping of rachis nodes per rachis, a critical determinant of grain yield components in wheat. Theor Appl Genet. 2019;132:2707–19.
Article
CAS
PubMed
Google Scholar
Yang Z, Bai Z, Li X, Wang P, Wu Q, Yang L, et al. SNP identification and allelic-specific PCR markers development for TaGW2, a gene linked to wheat kernel weight. Theor Appl Genet. 2012;125:1057–68.
Article
CAS
PubMed
Google Scholar
Zhang L, Zhao YL, Gao LF, Zhao GY, Zhou RH, Zhang BS, et al. TaCKX6-D1, the ortholog of rice OsCKX2, is associated with grain weight in hexaploid wheat. New Phytol. 2012;195:574–84.
Article
CAS
PubMed
Google Scholar
Hanif M, Gao F, Liu J, Wen W, Zhang Y, Rasheed A, et al. TaTGW6-A1, an ortholog of rice TGW6, is associated with grain weight and yield in bread wheat. Mol Breed. 2016;36:1–8.
Article
CAS
Google Scholar
Dong L, Wang F, Liu T, Dong Z, Li A, Jing R, et al. Natural variation of TaGASR7-A1 affects grain length in common wheat under multiple cultivation conditions. Mol Breed. 2014;34:937–47.
Article
CAS
Google Scholar
Yang J, Zhou Y, Wu Q, Chen Y, Zhang P, Zhang Y, et al. Molecular characterization of a novel TaGL3-5A allele and its association with grain length in wheat (Triticum aestivum L.). Theor Appl Genet. 2019;132:1799–814.
Article
CAS
PubMed
Google Scholar
Zhang Y, Liu J, Xia X, He Z. TaGS-D1, an ortholog of rice OsGS3, is associated with grain weight and grain length in common wheat. Mol Breed. 2014;34:1097–107.
Article
CAS
Google Scholar
Wang W, Pan Q, Tian B, He F, Chen Y, Bai G, et al. Gene editing of the wheat homologs of TONNEAU1-recruiting motif encoding gene affects grain shape and weight in wheat. Plant J. 2019;100:251–64.
Article
CAS
PubMed
PubMed Central
Google Scholar
Cao S, Xu D, Hanif M, Xia X, He Z. Genetic architecture underpinning yield component traits in wheat. Theor Appl Genet. 2020;133:1811–23.
Article
CAS
PubMed
Google Scholar
Okamoto Y, Nguyen AT, Yoshioka M, Iehisa JCM, Takumi S. Identification of quantitative trait loci controlling grain size and shape in the D genome of synthetic hexaploid wheat lines. Breed Sci. 2013;63:423–9.
Article
PubMed
PubMed Central
Google Scholar
Marza F, Bai GH, Carver BF, Zhou WC. Quantitative trait loci for yield and related traits in the wheat population Ning7840 x Clark. Theor Appl Genet. 2006;112:688–98.
Article
CAS
PubMed
Google Scholar
Liu T, Wu L, Gan X, Chen W, Liu B, Fedak G, et al. Mapping quantitative trait loci for 1000-grain weight in a double haploid population of common wheat. Int J Mol Sci. 2020;21:3960.
Article
PubMed Central
Google Scholar
Li X, Xia X, Xiao Y, He Z, Wang D, Trethowan R, et al. QTL mapping for plant height and yield components in common wheat under water-limited and full irrigation environments. Crop Pasture Sci. 2015;66:660–70.
Article
CAS
Google Scholar
Su Q, Zhang X, Zhang W, Zhang N, Song L, Liu L, et al. QTL Detection for Kernel Size and Weight in Bread Wheat (Triticum aestivum L.) Using a High-Density SNP and SSR-Based Linkage Map. Front. Plant Sci. 2018;9:1–13.
Google Scholar
Xin F, Zhu T, Wei S, Han Y, Zhao Y, Zhang D, et al. QTL Mapping of Kernel Traits and Validation of a Major QTL for Kernel Length-Width Ratio Using SNP and Bulked Segregant Analysis in Wheat. Sci Rep. 2020;10:1–12.
Article
CAS
Google Scholar
Mohan A, Grant NP, Schillinger WF, Gill KS. Characterizing reduced height wheat mutants for traits affecting abiotic stress and photosynthesis during seedling growth. Physiol Plant. 2021;172:233–46.
Article
CAS
PubMed
Google Scholar
Mo Y, Vanzetti LS, Hale I, Spagnolo EJ, Guidobaldi F, Al-Oboudi J, et al. Identification and characterization of Rht25, a locus on chromosome arm 6AS affecting wheat plant height, heading time, and spike development. Theor Appl Genet. 2018;131:2021–35.
Article
CAS
PubMed
Google Scholar
Guan P, Shen X, Mu Q, Wang Y, Wang X, Chen Y, et al. Dissection and validation of a QTL cluster linked to Rht-B1 locus controlling grain weight in common wheat (Triticum aestivum L.) using near-isogenic lines. Theor Appl Genet. 2020;133:2639–53.
Article
CAS
PubMed
Google Scholar
Duan X, Yu H, Ma W, Sun J, Zhao Y, Yang R, et al. A major and stable QTL controlling wheat thousand grain weight: identification, characterization, and CAPS marker development. Mol Breed. 2020;40:68.
Article
CAS
Google Scholar
Chen W, Sun D, Li R, Wang S, Shi Y, Zhang W, et al. Mining the stable quantitative trait loci for agronomic traits in wheat (Triticum aestivum L.) based on an introgression line population. BMC Plant Biol. 2020;20:1–9.
Article
CAS
Google Scholar
Maccaferri M, Ricci A, Salvi S, Milner SG, Noli E, Martelli PL, et al. A high-density, SNP-based consensus map of tetraploid wheat as a bridge to integrate durum and bread wheat genomics and breeding. Plant Biotechnol J. 2015;13:648–63.
Article
CAS
PubMed
Google Scholar
Li T, Deng G, Su Y, Yang Z, Tang Y, Wang J, et al. Identification and validation of two major QTLs for spike compactness and length in bread wheat (Triticum aestivum L.) showing pleiotropic effects on yield-related traits. Theor Appl Genet. 2021;134:3625–41.
Article
CAS
PubMed
Google Scholar
Li T, Deng G, Su Y, Yang Z, Tang Y, Wang J, et al. Genetic dissection of quantitative trait loci for grain size and weight by high-resolution genetic mapping in bread wheat (Triticum aestivum L.). Theor Appl Genet. 2022;135:257–71.
Article
CAS
PubMed
Google Scholar
Wang F, Zhang J, Chen Y, Zhang C, Gong J, Song Z, et al. Identification of candidate genes for key fibre-related QTLs and derivation of favourable alleles in Gossypium hirsutum recombinant inbred lines with G. barbadense introgressions. 2020:707–20.
Ma J, Pei W, Ma Q, Geng Y, Liu G, Liu J, et al. QTL analysis and candidate gene identification for plant height in cotton based on an interspecific backcross inbred line population of Gossypium hirsutum × Gossypium barbadense. Theor Appl Genet. 2019;132:2663–76.
Article
CAS
PubMed
Google Scholar
Han J, Han D, Guo Y, Yan H, Wei Z, Tian Y, et al. QTL mapping pod dehiscence resistance in soybean (Glycine max L. Merr.) using specific-locus amplified fragment sequencing. Theor Appl Genet. 2019;132:2253–72.
Article
CAS
PubMed
PubMed Central
Google Scholar
Li Q, Pan Z, Gao Y, Li T, Liang J, Zhang Z, et al. Quantitative Trait Locus (QTLs) Mapping for Quality Traits of Wheat Based on High Density Genetic Map Combined With Bulked Segregant Analysis RNA-seq (BSR-Seq) Indicates That the Basic 7S Globulin Gene Is Related to Falling Number. Front Plant Sci. 2020;11:1–21.
Article
Google Scholar
Cui F, Zhao C, Ding A, Li J, Wang L, Li X, et al. Construction of an integrative linkage map and QTL mapping of grain yield-related traits using three related wheat RIL populations. Theor Appl Genet. 2014;127:659–75.
Article
PubMed
Google Scholar
Li F, Wen W, He Z, Liu J, Jin H, Cao S, et al. Genome - wide linkage mapping of yield - related traits in three Chinese bread wheat populations using high - density SNP markers. Theor Appl Genet. 2018;131:1903–24.
Article
PubMed
Google Scholar
Lee HS, Jung JU, Kang CS, Heo HY, Park CS. Mapping of QTL for yield and its related traits in a doubled haploid population of Korean wheat. Plant Biotechnol Rep. 2014;8:443–54.
Article
Google Scholar
Maphosa L, Langridge P, Taylor H, Parent B, Emebiri LC, Kuchel H, et al. Genetic control of grain yield and grain physical characteristics in a bread wheat population grown under a range of environmental conditions. Theor Appl Genet. 2014;127:1607–24.
Article
PubMed
Google Scholar
Kumar A, Mantovani EE, Seetan R, Soltani A, Echeverry-Solarte M, Jain S, et al. Dissection of Genetic Factors underlying Wheat Kernel Shape and Size in an Elite x Nonadapted Cross using a High Density SNP Linkage Map. Plant. Genome. 2016;9.
McCartney CA, Somers DJ, Humphreys DG, Lukow O, Ames N, Noll J, et al. Mapping quantitative trait loci controlling agronomic traits in the spring wheat cross RL4452 x “AC Domain”. Genome. 2005;48:870–83.
Article
CAS
PubMed
Google Scholar
Mohler V, Albrecht T, Castell A, Diethelm M, Schweizer G, Hartl L. Considering causal genes in the genetic dissection of kernel traits in common wheat. J Appl Genet. 2016;57:467–76.
Article
CAS
PubMed
Google Scholar
Yan L, Liang F, Xu H, Zhang X, Zhai H, Sun Q, et al. Identification of QTL for grain size and shape on the D genome of natural and synthetic allohexaploid wheats with near-identical AABB genomes. Front Plant Sci. 2017;8:1–14.
Article
Google Scholar
Daba SD, Tyagi P, Brown-Guedira G, Mohammadi M. Genome-wide association study in historical and contemporary U.S. winter wheats identifies height-reducing loci. Crop J. 2020;8:243–51.
Article
Google Scholar
Luján Basile SM, Ramírez IA, Crescente JM, Conde MB, Demichelis M, Abbate P, et al. Haplotype block analysis of an Argentinean hexaploid wheat collection and GWAS for yield components and adaptation. BMC Plant Biol. 2019;19:1–16.
Article
CAS
Google Scholar
Ford BA, Foo E, Sharwood R, Karafiatova M, Vrána J, MacMillan C, et al. Rht18 Semidwarfism in Wheat Is Due to Increased GA 2-oxidaseA9 Expression and Reduced GA Content. Plant Physiol. 2018;177:168–80.
Article
CAS
PubMed
PubMed Central
Google Scholar
Liu K, Sun X, Ning T, Duan X, Wang Q, Liu T, et al. Genetic dissection of wheat panicle traits using linkage analysis and a genome-wide association study. Theor Appl Genet. 2018;131:1073–90.
Article
CAS
PubMed
Google Scholar
Cao P, Liang X, Zhao H, Feng B, Xu E, Wang L, et al. Identification of the quantitative trait loci controlling spike-related traits in hexaploid wheat (Triticum aestivum L.). Planta. 2019;250:1967–81.
Article
CAS
PubMed
Google Scholar
Tian X, Wen W, Xie L, Fu L, Xu D, Fu C, et al. Molecular mapping of reduced plant height gene Rht24 in bread wheat. Front Plant Sci. 2017;8:1–9.
Article
Google Scholar
Ma J, Tu Y, Zhu J, Luo W, Liu H, Li C, et al. Flag leaf size and posture of bread wheat: genetic dissection, QTL validation and their relationships with yield-related traits. Theor Appl Genet. 2020;133:297–315.
Article
CAS
PubMed
Google Scholar
Gao F, Wen W, Liu J, Rasheed A, Yin G, Xia X, et al. Genome-Wide Linkage Mapping of QTL for Yield Components, Plant Height and Yield-Related Physiological Traits in the Chinese Wheat Cross Zhou 8425B/Chinese Spring. Front Plant Sci. 2015;6:1099.
Article
PubMed
PubMed Central
Google Scholar
Zhang K, Wang J, Qin H, Wei Z, Hang L, Zhang P, et al. Assessment of the individual and combined effects of Rht8 and Ppd-D1a on plant height, time to heading and yield traits in common wheat. Crop J. 2019;7:845–56.
Article
Google Scholar
Rebetzke GJ, Ellis MH, Bonnett DG, Mickelson B, Condon AG, Richards RA. Height reduction and agronomic performance for selected gibberellin-responsive dwarfing genes in bread wheat (Triticum aestivum L.). F Crop Res. 2012;126:87–96.
Article
Google Scholar
Wang Y, Du Y, Yang Z, Chen L, Condon AG, Hu YG. Comparing the effects of GA-responsive dwarfing genes Rht13 and Rht8 on plant height and some agronomic traits in common wheat. F Crop Res. 2015;179:35–43.
Article
Google Scholar
Yang W, Liu D, Li J, Zhang L, Wei H, Hu X, et al. Synthetic hexaploid wheat and its utilization for wheat genetic improvement in China. J Genet Genomics. 2009;36:539–46.
Article
CAS
PubMed
Google Scholar
Brinton J, Ramirez-Gonzalez RH, Simmonds J, Wingen L, Orford S, Griffiths S, et al. A haplotype-led approach to increase the precision of wheat breeding. Commun Biol. 2020;3:1–11.
Article
CAS
Google Scholar
Chai L, Chen Z, Bian R, Zhai H, Cheng X, Peng H, et al. Correction to: Dissection of two quantitative trait loci with pleiotropic effects on plant height and spike length linked in coupling phase on the short arm of chromosome 2D of common wheat (Triticum aestivum L.). Theor Appl Genet. 2019;132:3225.
Article
PubMed
PubMed Central
Google Scholar
Borrill P, Ramirez-Gonzalez R, Uauy C. expVIP: A customizable RNA-seq data analysis and visualization platform. Plant Physiol. 2016;170:2172–86.
Article
CAS
PubMed
PubMed Central
Google Scholar
Ramírez-González RH, Borrill P, Lang D, Harrington SA, Brinton J, Venturini L, et al. The transcriptional landscape of polyploid wheat. Science. 2018;361:eaar6089.
Article
PubMed
CAS
Google Scholar
Miao J, Yang Z, Zhang D, Wang Y, Xu M, Zhou L, et al. Mutation of RGG2, which encodes a type B heterotrimeric G protein γ subunit, increases grain size and yield production in rice. Plant Biotechnol J. 2019;17:650–64.
Article
CAS
PubMed
Google Scholar
Li N, Li Y. Ubiquitin-mediated control of seed size in plants. Front Plant Sci. 2014;5:1–6.
Article
Google Scholar
Smalle J, Kurepa J, Yang P, Emborg TJ, Babiychuk E, Kushnir S, et al. The pleiotropic role of the 26S proteasome subunit RPN10 in Arabidopsis growth and development supports a substrate-specific function in abscisic acid signaling. Plant Cell. 2003;15:965–80.
Article
CAS
PubMed
PubMed Central
Google Scholar
Li N, Xu R, Li Y. Molecular Networks of Seed Size Control in Plants. Annu Rev Plant Biol. 2019;70:435–63.
Article
CAS
PubMed
Google Scholar
Li Q, Li L, Yang X, Warburton ML, Bai G, Dai J, et al. Relationship, evolutionary fate and function of two maize co-orthologs of rice GW2 associated with kernel size and weight. BMC Plant Biol. 2010;10:1–15.
Article
CAS
Google Scholar
Chen C, Chen H, Zhang Y, Thomas HR, Frank MH, He Y, et al. TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data. Mol Plant. 2020;13:1194–202.
Article
CAS
PubMed
Google Scholar
Smith SE, Kuehl RO, Ray IM, Hui R, Soleri D. Evaluation of simple methods for estimating broad-sense heritability in stands of randomly planted genotypes. Crop Sci. 1998;38:1125–9.
Article
Google Scholar
Appels R, Eversole K, Feuillet C, Keller B, Rogers J, Stein N, et al. Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science. 2018;361:eaar7191.
Ma S, Wang M, Wu J, Guo W, Chen Y, Li G, et al. WheatOmics: A platform combining multiple omics data to accelerate functional genomics studies in wheat. Mol Plant. 2021;14:1965–8.
Article
CAS
PubMed
Google Scholar
Chen Y, Song W, Xie X, Wang Z, Guan P, Peng H, et al. A Collinearity-Incorporating Homology Inference Strategy for Connecting Emerging Assemblies in the Triticeae Tribe as a Pilot Practice in the Plant Pangenomic Era. Mol Plant. 2020;13:1694–708.
Article
CAS
PubMed
Google Scholar