Serpell J, Clutton-broke J, Coppinger R, Schneider R, Willis MB, Benjamin L. In: Serpell J, editor. The domestic dog: its evolution behavior and interactions with people. Camebridge: Cambridge University press; 1995. p. 7–20.
Google Scholar
Shearman JR, Wilton AN. Origins of the domestic dog and the rich potential for gene mapping. Genet Res Int. 2011;2011. https://doi.org/10.4061/2011/579308.
Article
Google Scholar
Vila C, Jennifer AL. Canid phylogeny and origin of the domestic dog. In: Ostrander EA, Ruvinsky A. the genetics of the dog. Oxfordshire: CABI; 2012. p. 1–9.
Spady TC, Ostrander EA. Canine behavioral genetics: pointing out the phenotypes and herding up the genes. Am J Hum Genet. 2008;82:10–8. https://doi.org/10.1016/j.ajhg.2007.12.001.
Article
CAS
PubMed
PubMed Central
Google Scholar
Ostermeier M. History of guide dog use by veterans. Mil Med. 2010;175(8):587–93.
Article
PubMed
Google Scholar
Wang GD, Zhai W, Yang HC, Wang L, Zhong L, Liu YH, et al. Out of southern East Asia: the natural history of domestic dogs across the world. Nat Publ Gr. 2015;26:21–3321. https://doi.org/10.1038/cr.2015.147.
Article
CAS
Google Scholar
Tanabe Y. Phylogenetic studies of dogs with emphasis on Japanese and Asian breeds. Proc Jpn Acad, Ser B. 2006;82 https://www.jstage.jst.go.jp/article/pjab/82/10/82_10_375/_pdf. Accessed 13 Dec 2017.
Fan Z, Silva P, Gronau I, Wang S, Armero AS, Schweizer RM, et al. Worldwide patterns of genomic variation and admixture in gray wolves. Genome Res. 2016;26:163–73. https://doi.org/10.1101/gr.197517.115.
Article
CAS
PubMed
PubMed Central
Google Scholar
Savolainen P, Zhang Y, Luo J, Lundeberg J, Leitner T. Genetic evidence for an east Asian origin of domestic dogs. Science. 2002;298:1610–3. https://doi.org/10.1126/science.1073906.
Article
CAS
PubMed
Google Scholar
Ding ZL, Oskarsson M, Ardalan A, Angleby H, Dahlgren LG, Tepeli C, et al. Origins of domestic dog in southern East Asia is supported by analysis of Y-chromosome DNA. Heredity (Edinb). 2012;108:507–14. https://doi.org/10.1038/hdy.2011.114.
Article
CAS
PubMed
Google Scholar
Wang J, Santiago E, Caballero A. Prediction and estimation of effective population size. Heredity (Edinb). 2016;117:193–206. https://doi.org/10.1038/hdy.2016.43.
Article
CAS
PubMed
PubMed Central
Google Scholar
Cho GJ. Microsatellite polymorphism and Genetic relationship in dog breeds in Korea. Asian-Australasian J Anim Sci. 2005;18:1071–4. https://doi.org/10.5713/ajas.2005.1071.
Article
CAS
Google Scholar
Parker HG, Dreger DL, Rimbault M, Davis BW, Mullen AB, Carpintero-Ramirez G, Ostrander EA. Genomic analyses reveal the influence of geographic origin, migration, and hybridization on modern dog breed development. Cell Rep. 2017;19:697–708. https://doi.org/10.1016/j.celrep.2017.03.079.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kang BT, Kim KS, Min MS, Chae YJ, Kang JW, Yoon J, et al. Microsatellite loci analysis for the genetic variability and the parentage test of five dog breeds in South Korea. Genes Genet Syst. 2009;84:245–51 http://www.ncbi.nlm.nih.gov/pubmed/19745574. Accessed 18 Dec 2017.
Article
CAS
PubMed
Google Scholar
Yoo D, Kim K, Kim H, Cho S, Kim JN, Lim D, et al. The Genetic origin of short tail in endangered Korean dog, DongGyeongi. Sci Rep. 2017;7:10048. https://doi.org/10.1038/s41598-017-10106-6.
Article
CAS
PubMed
PubMed Central
Google Scholar
Lee HE, Choi BH, Lee DH, Kwon YJ, Eo J, Choi Y, et al. Polymorphism analysis of tyrosine hydroxylase gene variable number of tandem repeats in various Korean dogs. Genes Genomics. 2015;37:257–61. https://doi.org/10.1007/s13258-014-0243-4.
Article
CAS
Google Scholar
Skabelund AH. Empire of dogs : canines, Japan, and the making of the modern imperial world, vol. 196. Ithaca: Cornell University Press; 2011.
Ha JH, Alam M, Lee DH, Kim JJ. Whole genome association study to detect single nucleotide polymorphisms for behavior in Sapsaree dog (Canis familiaris). Asian-Australasian J Anim Sci. 2015;28:936–42. https://doi.org/10.5713/ajas.14.0941.
Article
CAS
Google Scholar
Kim JE, Choe J, Lee JH, Kim WB, Cho W, Ha JH, et al. Whole-transcriptome analyses of the Sapsaree, a Korean natural monument, before and after exercise-induced stress. J Anim Sci Technol. 2016;58:17. https://doi.org/10.1186/s40781-016-0097-1.
Article
CAS
PubMed
PubMed Central
Google Scholar
Alam M, Han KI, Lee DH, Ha JH, Kim JJ. Estimation of effective population size in the Sapsaree: a Korean native dog (Canis familiaris). Asian-Australasian J Anim Sci. 2012;25:1063–72. https://doi.org/10.5713/ajas.2012.12048.
Article
CAS
Google Scholar
Kim KS, Tanabe Y, Park CK, Ha JH. Genetic variability in east Asian dogs using microsatellite loci analysis. J Hered. 2001;92:398–403. https://doi.org/10.1093/jhered/92.5.398.
Article
CAS
PubMed
Google Scholar
Han KI, Alam M, Lee YM, Lee DH, Ha JH, Kim JJ. A study on morphology and behavior of the Sapsaree : a Korean native dog (Canis familiaris). J Anim Sci Technol. 2010;52:481–90. https://doi.org/10.5187/JAST.2010.52.6.481.
Article
Google Scholar
Jeong H, Choi B-H, Eo J, Kwon YJ, Lee HE, Choi Y, et al. Statistical analysis and genetic diversity of three dog breeds using simple sequence repeats. Genes Genomics. 2014;36:883–9. https://doi.org/10.1007/s13258-014-0237-2.
Article
Google Scholar
Al-Mamun HA, A Clark S, Kwan P, Gondro C. Genome-wide linkage disequilibrium and genetic diversity in five populations of Australian domestic sheep. Genet Sel Evol 2015;47:90. doi:https://doi.org/10.1186/s12711-015-0169-6.
Wultsch C, Caragiulo A, Dias-Freedman I, Quigley H, Rabinowitz S, Amato G. Genetic diversity and population structure of Mesoamerican jaguars (Panthera onca): implications for conservation and management. PLoS One. 2016;11:e0162377. https://doi.org/10.1371/journal.pone.0162377.
Article
CAS
PubMed
PubMed Central
Google Scholar
vonHoldt BM, Pollinger JP, Lohmueller KE, Han E, Parker HG, Quignon P, et al. Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication. Nature. 2010;464:898–902. https://doi.org/10.1038/nature08837.
Article
CAS
PubMed
PubMed Central
Google Scholar
Decker JE, McKay SD, Rolf MM, Kim J, Molina Alcalá A, Sonstegard TS, et al. Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle. PLoS Genet. 2014;10:e1004254. https://doi.org/10.1371/journal.pgen.1004254.
Article
CAS
PubMed
PubMed Central
Google Scholar
Falconer DS, Mackay TF. Introduction to quantitative genetics (4th edn). Pearson United Kingdom; 1996. p. 48–81.
Google Scholar
Hayes BJ, Visscher PM, McPartlan HC, Goddard ME. Novel multilocus measure of linkage disequilibrium to estimate past effective population size. Genome Res. 2003;13:635–43. https://doi.org/10.1101/gr.387103.
Article
CAS
PubMed
PubMed Central
Google Scholar
Shin DH, Cho KH, Park KD, Lee HJ, Kim H. Accurate estimation of effective population size in the Korean dairy cattle based on linkage disequilibrium corrected by genomic relationship matrix. Asian-Australasian J Anim Sci. 2013;26:1672–9. https://doi.org/10.5713/ajas.2013.13320.
Article
Google Scholar
Frankham R. Conservation genetics. Annu Rev Genet. 1995;29:305–27. https://doi.org/10.1146/annurev.ge.29.120195.001513.
Article
CAS
PubMed
Google Scholar
Toro MA, Caballero A. Characterization and conservation of genetic diversity in subdivided populations. Philos Trans R Soc B Biol Sci. 2005;360:1367–78. https://doi.org/10.1098/rstb.2005.1680.
Article
CAS
Google Scholar
Lee EW, Choi SK, Cho GJ. Molecular Genetic diversity of the Gyeongju Donggyeong dog in Korea. J Vet Med Sci. 2014;76:14–189. https://doi.org/10.1292/jvms.14-0189.
Article
Google Scholar
Shannon LM, Boyko RH, Castelhano M, Corey E, Hayward JJ, McLean C, et al. Genetic structure in village dogs reveals a central Asian domestication origin. Proc Natl Acad Sci U S A. 2015;112(44):13639. https://doi.org/10.1073/pnas.1516215112.
Article
CAS
PubMed
PubMed Central
Google Scholar
Young A, Bannasch D. Morphological variation in the dog. In: Ostrander EA, Giger U, Lindblad-Toh K. The dog and its genome. Cold Spring Harbor: Cold Spring Harbor Laboratory Press; 2006. p. 47–63.
Chang CC, Chow CC, Tellier LC, Vattikuti S, Purcell SM, Lee JJ. Second-generation PLINK: rising to the challenge of larger and richer datasets. Gigascience. 2015;4:7. https://doi.org/10.1186/s13742-015-0047-8.
Article
CAS
PubMed
PubMed Central
Google Scholar
Anderson CA, Pettersson FH, Clarke GM, Cardon LR, Morris AP, Zondervan KT. Data quality control in genetic case-control association studies. Nat Protoc. 2010;5:1564–73. https://doi.org/10.1038/nprot.2010.116.
Article
CAS
PubMed
PubMed Central
Google Scholar
Hill WG, Robertson A. Linkage disequilibrium in finite populations. Theor Appl Genet. 1968;38(6):226–31. https://doi.org/10.1007/bf01245622.
Article
CAS
PubMed
Google Scholar
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, Bender D, Maller J, Sklar P, De Bakker PI, Daly MJ, Sham PC. Plink: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet. 2007;81:559–75. https://doi.org/10.1086/519795.
Article
CAS
PubMed
PubMed Central
Google Scholar
Sved JA. Linkage disequilibrium and homozygosity of of chromosome segments. Theor Popul Biol. 1971;141:125–41. https://doi.org/10.1016/0040-5809(71)90011-6.
Article
Google Scholar
Sargolzaei M, Schenkel FS, Jansen GB, Schaeffer LR. Extent of linkage disequilibrium in Holstein cattle in NorthAmerica. J Dairy Sci. 2008;91:2106–17.
Article
CAS
PubMed
Google Scholar
Barbato M, Orozco-terWengel P, Tapio M, Bruford MW. SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data. Front Genet. 2015;6:109.
Article
PubMed
PubMed Central
Google Scholar
Genetic Drift HP. Effective population size, chapter 4. In: Genetics of populations, 4th edition, Jones and Bartlett publishers; 2011. p. 196–8.
Google Scholar
R Core Team. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. 2016; ISBN 3–900051–07-0, URL http://www.R-project.org/.
Alexander DH, Novembre J, Lange K. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 2009;19(9):1655–64. https://doi.org/10.1101/gr.094052.109.
Article
CAS
PubMed
PubMed Central
Google Scholar
Lee TH, Guo H, Wang X, Kim C, Paterson AH. SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data. BMC Genomics. 2014;15:162. https://doi.org/10.1186/1471-2164-15-162.
Article
PubMed
PubMed Central
Google Scholar
Rambaut, A. FigTree v1.4.2 molecular evolution, phylogenetics and epidemiology, Institute of Evolutionary Biology, University of Edinburgh. 2014; (http://tree.bio.ed.ac.uk/software/figtree/).
Brito LF, Jafarikia M, Grossi DA, Kijas JW, Porto-Neto LR, Ventura RV, et al. Characterization of linkage disequilibrium, consistency of gametic phase and admixture in Australian and Canadian goats. BMC Genet. 2015;16:67. https://doi.org/10.1186/s12863-015-0220-1.
Article
CAS
PubMed
PubMed Central
Google Scholar
Bettany S, Daly R. Figuring companion-species consumption: a multi-site ethnography of the post-canine afghan hound. J Bus Res. 2008;61:408–18. https://doi.org/10.1016/J.JBUSRES.2006.08.010.
Article
Google Scholar
Niblock M. The afghan hound : a definitive study. Arco Pub; 1980. https://bepl.ent.sirsi.net/client/en_US/default/search/detailnonmodal/ent:$002f$002fSD_ILS$002f0$002fSD_ILS:185175/ada. Accessed 5 Dec 2017.
Dobson JM. Breed-predispositions to cancer in pedigree dogs. ISRN Vet Sci. 2013;2013:941275. https://doi.org/10.1155/2013/941275.
Article
CAS
PubMed
PubMed Central
Google Scholar
Sharma A, Lee SH, Lim D, Chai HH, Choi BH, Cho Y. A genome-wide assessment of genetic diversity and population structure of Korean native cattle breeds. BMC Genet. 2016;17:139. https://doi.org/10.1186/s12863-016-0444-8.
Article
PubMed
PubMed Central
Google Scholar
Sutter NB, Eberle MA, Parker HG, Pullar BJ, Kirkness EF, Kruglyak L, et al. Extensive and breed-specific linkage disequilibrium in Canis familiaris. Genome Res. 2004;14:2388–96. https://doi.org/10.1101/gr.3147604.
Article
CAS
PubMed
PubMed Central
Google Scholar
Hayes B.J. Ben Hayes Course Notes, Toulouse. 2011. http://snp.toulouse.inra.fr/~alegarra/ben_hayes_course/toulouse_course_notes.pdf. Accessed 4 Jan 2018.
Choi BH, Wijayananda HI, Lee SH, Lee DH, Kim JS. Oh S Il, et al. genome-wide analysis of the diversity and ancestry of Korean dogs. PLoS One. 2017;12:e0188676. https://doi.org/10.1371/journal.pone.0188676.
Article
PubMed
PubMed Central
Google Scholar
Lachance J, Tishkoff SA. SNP ascertainment bias in population genetic analyses: why it is important, and how to correct it. BioEssays. 2013;35:780–6. https://doi.org/10.1002/bies.201300014.
Article
CAS
PubMed
PubMed Central
Google Scholar
Hare MP, Nunney L, Schwartz MK, Ruzzante DE, Burford M. Understanding and estimating effective population size for practical application in marine species management. Conserv Biol. 2011;25(3):438–49 https://doi.org/10.1111/j.1523-1739.2010.01637.x.
Article
PubMed
Google Scholar
Meuwissen T. Genetic management of small populations: a review. Acta Agric Scand Sect A - Anim Sci. 2009;59:71–9. https://doi.org/10.1080/09064700903118148.
Article
CAS
Google Scholar
Hague MTJ, Routman EJ. Does population size affect genetic diversity? A test with sympatric lizard species. Heredity (Edinb). 2016;116:92–8. https://doi.org/10.1038/hdy.2015.76.
Article
CAS
Google Scholar
Jansson M, Laikre L. Pedigree data indicate rapid inbreeding and loss of genetic diversity within populations of native, traditional dog breeds of conservation concern. PLoS One. 2018;13:e0202849. https://doi.org/10.1371/journal.pone.0202849.
Article
CAS
PubMed
PubMed Central
Google Scholar
Vila C, Maldonado J, Wayne R. Phylogenetic relationships, evolution, and genetic diversity of the domestic dog. J Hered. 1999;90:71–7. https://doi.org/10.1093/jhered/90.1.71.
Article
CAS
PubMed
Google Scholar
Kimura M. The neutral theory of molecular evolution: Cambridge University Press; 1983.
Oldenbroek K, Van der Waaij L. Textbook animal breeding and genetics for BSc students. Chapter 6.2.2: loss of genetic diversity: selection: Centre for Genetic Resources. The Netherlands and Animal Breeding and Genomics Centre; 2015.
Olsen SJ, Olsen JW, Luo J, Lundeberg J, Leitner T. The Chinese wolf, ancestor of New World dogs. Science (80- ). 1977;197:533–5. https://doi.org/10.1126/science.197.4303.533.
Article
CAS
Google Scholar
DeGiorgio M, Jankovic I, Rosenberg NA. Unbiased estimation of gene diversity in samples containing related individuals: exact variance and arbitrary ploidy. Genetics. 2010;186:1367–87. https://doi.org/10.1534/genetics.110.121756.
Article
PubMed
PubMed Central
Google Scholar
Parker GH, Sutter NB, Ostrander EA. Understanding genetic relationship among purebred dogs: the phyDO project, chapter 9. 2006. In: Ostrander, E. a., Giger, U., and Lindblad-Toh, K. the dog and its genome: Cold Spring Harbor Laboratory Press; 2006. p. 141–55.
Mortlock SA, Khatkar MS, Williamson P. Comparative analysis of genome diversity in bullmastiff dogs. PLoS One. 2016;11:e0147941. https://doi.org/10.1371/journal.pone.0147941.
Article
CAS
PubMed
PubMed Central
Google Scholar
Marsden CD, Ortega-Del Vecchyo D, O’Brien DP, Taylor JF, Ramirez O, Vilà C, et al. Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs. Proc Natl Acad Sci U S A. 2016;113:152–7. https://doi.org/10.1073/pnas.1512501113.
Article
CAS
PubMed
Google Scholar
Wayne RK, Ostrander EA. Lessons learned from the dog genome. Trends Genet. 2007;23:557–67. https://doi.org/10.1016/J.TIG.2007.08.013.
Article
CAS
PubMed
Google Scholar
Kekkonen J, Wikström M, Brommer JE. Heterozygosity in an isolated population of a large mammal founded by four individuals is predicted by an individual-based Genetic model. PLoS One. 2012;7:e43482. https://doi.org/10.1371/journal.pone.0043482.
Article
CAS
PubMed
PubMed Central
Google Scholar
Ostrander E. A genetics and the shape of dogs. Amer Sci. 2007;95:406–13 http://www.luadalmatians.com/ostrander_article.pdf Accessed 12 Dec 2017.
Article
Google Scholar
Nei M, Maruyama T, Chakraborty R. The bottleneck effect and Genetic variability in populations. Evolution (N Y). 1975;29(1). https://doi.org/10.2307/2407137.
Article
PubMed
Google Scholar
Chakraborty R, Nei M. Bottleneck effects on average heterozygosity and Genetic distance with the stepwise mutation model. Evolution (N Y). 1977;31:347. https://doi.org/10.2307/2407757.
Article
Google Scholar
Cabe PR. The effects of founding bottlenecks on genetic variation in the European starling (Sturnus vulgaris) in North America. Heredity (Edinb). 1998;80:519–25. https://doi.org/10.1046/j.1365-2540.1998.00296.x.
Article
Google Scholar
Clark LA, Starr-Moss A. Genetics and genomics of the domestic dog. Chapter. 12 in; Khatib H. molecular and quantitative animal genetics. Hoboken: Wiley; 2015. p. 121–9.
Google Scholar
The Korean Sapsaree Foundation. Sapsaree and the Korean Nation; Restoration of the Sapsaree http://koreansapsaree.weebly.com/history.html and http://www.sapsaree.org/html/. Accessed 8 Feb 2019.
Ha JH, Chung WB, Lee SL, Tak RB, Kim JB. Studies on the Characteristics of Coat Color and Genetic Inter-Relationship among Korean Native Dog, Sapsaree. Korean J Genetics. 1991;13(4):247–54. http://www.papersearch.net/thesis/article.asp?key=166664.
Google Scholar
Debroy B. Sarama and her children : the dog in Indian myth. New Delhi: Penguin Books; 2008. p. 1–16.
Cunliffe J. Lhasa Apso : a comprehensive guide to owning and caring for your dog. Freehold: Kennel Club Books; 2012. p. 9–25.
Sefton F, Schneider E. Know your Lhasa apso. Pet Library; 2011. p. 5–8.
Google Scholar
Clark RD. Medical, Genetic & Behavioral Risk Factors of Tibetan Terriers. Bloomington: Xlibris; 2014. p. 1–2.
Hafer T, Hafer J. 101 Amazing Things About Dog Lovers Broadstreet Publishing Group, LLC, vol. 5; 2017.
Google Scholar
Grayson JH. Early Buddhism and Christianity in Korea : a study in the emplantation of religion. Leiden: E.J. Brill; 1985. p. 1–20.
Lancaster LR, Yu CS. Introduction of Buddhism to Korea : new cultural patterns. Fremont: Asian Humanities Press; 1989. p. 1–4.
Buswell RE, Lee TS. Christianity in Korea. Honolulu: University of Hawaiʻi; 2006. p. 7–21.
Schratz PR. Submarine commander : a story of world war II and Korea. Lexington: University Press of Kentucky; 1988. p. 52–100.
Edwards PM. United Nations participants in the Korean war : the contributions of 45 member countries. Jefferson: McFarland & Company, Inc. Publishers; 2013. p. 19–29.
Millett AR. The Korean war. Korea Institute of Military History. Lincoln: University of Nebraska Press; 2000.
Liu X. The silk road in world history: Oxford University Press, Inc; 2010. p. 42–62. http://14.139.206.50:8080/jspui/bitstream/1/2626/1/Liu - the Silk Road in World History.pdf. Accessed 29 Dec 2017
Wood F. The silk road : two thousand years in the heart of Asia. Berkeley: University of California Press; 2002. p. 8–28.
Whitfield S, Sims-Williams U, Library B. The silk road : trade, travel, war and faith, vol. 24. Chicago: Serindia Publications; 2004.
Comas D, Calafell F, Mateu E, Pérez-Lezaun A, Bosch E, Martínez-Arias R, et al. Trading genes along the silk road: mtDNA sequences and the origin of central Asian populations. Am J Hum Genet. 1998;63:1824–38. https://doi.org/10.1086/302133.
Article
CAS
PubMed
PubMed Central
Google Scholar