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Table 4 Markers and genes significantly associated with yield in the two environments

From: Genetic characterization of inbred lines from Shaan A and B groups for identifying loci associated with maize grain yield

Environment Chr Pos P-value Marker R2 MAF Candidate interval Gene ID
Yangling 1 64,203,074 2.54E-04 0.182 0.071 64,053,074–64,353,074 Zm00001d029264
Yangling, Yulin 1 9,026,216 4.18E-04 0.149 0.107 8,876,216–9,176,216 Zm00001d027610
Yangling 1 296,366,071 5.48E-04 0.150 0.28 296,216,071–296,516,071 Zm00001d034563
Yangling 1 82,414,042 5.88E-04 0.179 0.071 82,264,042–82,564,042 Zm00001d029679
Yangling 1 275,324,785 7.76E-04 0.216 0.269 275,174,785–275,474,785 Zm00001d033834
Yangling 1 208,984,720 8.68E-04 0.113 0.061 208,834,720–209,134,720 Zm00001d031996
Yangling 2 17,192,443 1.72E-04 0.136 0.084 17,042,443–17,342,443 Zm00001d002623
Yangling 3 174,894,572 1.50E-04 0.174 0.255 174,744,572–175,044,572 Zm00001d042637
Yangling 3 217,771,512 7.76E-04 0.109 0.364 217,621,512–217,921,512 Zm00001d044048
Yangling 3 151,015,584 8.38E-04 0.110 0.054 150,865,319–151,165,584 Zm00001d042108
Yulin 4 226,628,381 8.83E-05 0.286 0.262 226,478,381–226,778,381 Zm00001d053334
Yangling 4 36,611,473 1.77E-04 0.182 0.349 36,461,473–36,761,473 Zm00001d049590
Yulin 4 224,904,708 2.76E-04 0.115 0.09 224,754,708–225,054,708 Zm00001d053298
Yulin 4 227,248,589 5.65E-04 0.133 0.248 227,098,589–227,398,589 Zm00001d053354
Yulin 4 228,002,806 7.35E-04 0.14 0.095 227,812,359–228,152,806 Zm00001d053369
Yulin 4 197,048,390 1.09E-03 0.116 0.232 196,898,390–197,198,390 Zm00001d052678
Yulin 4 222,979,053 1.09E-03 0.117 0.200 222,829,053–223,129,053 Zm00001d053259
Yangling 5 60,500,183 7.64E-04 0.102 0.064 60,350,183–60,650,183 Zm00001d014722
Yangling 6 37,566,120 4.97E-04 0.130 0.257 37,416,120–37,716,120 Zm00001d035629
Yangling 7 6,198,940 7.25E-04 0.140 0.285 5,969,535–6,348,940 Zm00001d018819
Yulin 7 6,119,535 7.34E-04 0.126 0.366 5,969,535–6,348,940 Zm00001d018819
Yangling 7 165,187,310 9.21E-04 0.113 0.087 165,037,310–165,337,310 Zm00001d021877
Yangling 8 166,364,288 2.95E-04 0.154 0.070 166,214,288–166,514,288 Zm00001d012007
Yulin 8 134,765,776 4.07E-04 0.226 0.176 134,615,776–134,915,776 Zm00001d010946
Yangling 8 103,836,414 4.24E-04 0.104 0.096 103,686,414–103,986,414 Zm00001d010201
Yangling 8 153,275,644 5.55E-04 0.129 0.133 153,108,098–153,425,644 Zm00001d011515
Yulin 9 26,330,295 6.05E-05 0.145 0.073 26,180,295–26,480,295 unknown
Yangling 9 95,895,364 2.94E-04 0.251 0.362 95,745,364–96,045,364 Zm00001d046558
Yangling 9 53,338,849 3.34E-04 0.125 0.105 53,188,849–53,488,849 Zm00001d046004
Yangling 9 124,887,914 3.72E-04 0.127 0.056 124,737,914–125,037,914 Zm00001d047266
Yangling 10 126,844,985 5.79E-04 0.121 0.056 126,694,985–126,994,985 Zm00001d025703
Yangling 10 123,993,567 6.10E-04 0.114 0.329 123,843,567–124,143,567 Zm00001d025617
Yulin 10 13,050 8.89E-04 0.100 0.154 0–163,050 unknown