Pop | Signals | Lead SNPb | Chr | Position | P value | Contr% | Known gene | Dis (kb) | QTL | Reference |
---|---|---|---|---|---|---|---|---|---|---|
Whole | ARS1.1ca | sf0131727984 | 1 | 31727984 | 1E-09 | 0.3 | GA2ox3 | 66 | Â | Â |
 | ARS1.2 | sf0138588391 | 1 | 38588391 | 6E-09 | 29.3 |  |  | qSD1 | [79] |
 | ARS2.1 | sf0206686399 | 2 | 6686399 | 4.1E-09 | 0.1 | OsHPL2 | −56 | qSD2 | [32] |
 | ARS5.1 | sf0523494718 | 5 | 23494718 | 1.5E-09 | 9.1 | EXP4 | −60 |  |  |
 | ARS6.1 | sf0611491573 | 6 | 11491573 | 1E-10 | 0.5 |  |  | qSD6 | [79] |
 | ARS6.2 | sf0620628649 | 6 | 20628649 | 1.3E-09 | 2.4 |  |  |  |  |
 | ARS7.1 | sf0720587413 | 7 | 20587413 | 1E-10 | 1.8 |  |  |  |  |
 | ARS8.1 | sf0807777822 | 8 | 7777822 | 2.6E-08 | 0.7 |  |  |  |  |
 | ARS9.1 | sf0905593232 | 9 | 5593232 | 7.3E-10 | 1.6 |  |  |  |  |
 | ARS9.2 | sf0914236447 | 9 | 14236447 | 3.7E-08 | 3.9 |  |  |  |  |
 | ARS10.1 | sf1019156688 | 10 | 19156688 | 2.4E-10 | 0.6 |  |  |  |  |
 | ARS11.1 | sf1101407923 | 11 | 1407923 | 2.5E-08 | 0.1 |  |  | qDOR11–1 | [80] |
 | ARS11.2a | sf1114328194 | 11 | 14328194 | 5.6E-10 | 1.2 |  |  |  |  |
 | ARS12.1 | sf1207745486 | 12 | 7745486 | 1.1E-10 | 2.9 | OsMADS13 | 52 |  |  |
Aus | ARS1.1ca | sf0131706848 | 1 | 31706848 | 8.4E-08 | 0.7 | GA2ox3 | 87 | Â | Â |
 | ARS2.2 | sf0226365962 | 2 | 26365962 | 6.2E-09 | 27.3 | AP59 | 50 |  |  |
 | ARS8.2 | sf0804981132 | 8 | 4981132 | 2.6E-07 | 40.1 |  |  |  |  |
 | ARS11.3 | sf1103208304 | 11 | 3208304 | 1.7E-07 | 9.5 | OsAsr1 | 66 | qDOR11–1 | [80] |
Indica | ARS1.3 | sf0137198693 | 1 | 37198693 | 9.8E-09 | 1.7 | OsABI5 | 23 | qSD.1 | [31] |
 | ARS2.3 | sf0201212724 | 2 | 1212724 | 8.6E-09 | 2.0 |  |  |  |  |
 | ARS3c | sf0332024688 | 3 | 32024688 | 1.7E-08 | 9.3 | OSH43 | −61 | qDOR3–3 | [80] |
 | ARS4.1 | sf0403783716 | 4 | 3783716 | 1.6E-10 | 30.2 |  |  |  |  |
 | ARS6.3 | sf0613057982 | 6 | 13057982 | 9.8E-11 | 7.0 | Pid3 | −1 |  |  |
 | ARS7.2 | sf0726194419 | 7 | 26194419 | 4.6E-09 | 8.4 |  |  |  |  |
 | ARS10.2 | sf1018639995 | 10 | 18639995 | 7.2E-08 | 0.9 |  |  |  |  |
 | ARS11.4 | sf1119110821 | 11 | 19110821 | 5.7E-08 | 8.0 |  |  | qDOR11–3 | [80] |
 | ARS11.5 | sf1126973978 | 11 | 26973978 | 1.5E-08 | 1.1 |  |  | qDOR11–6 | [80] |
 | ARS12.2 | sf1214076931 | 12 | 14076931 | 5.7E-10 | 5.4 |  |  |  |  |
Japonica | ARS2.4 | sf0232512303 | 2 | 32512303 | 2E-07 | 6.6 | Â | Â | Â | Â |
 | ARS3 | sf0331989391 | 3 | 31989391 | 5.2E-08 | 0.7 | OSH43 | −26 | qDOR3–3 | [80] |
 | ARS4.2 | sf0421860784 | 4 | 21860784 | 3.9E-09 | 36.6 | OsCLC-1 | 25 |  |  |
 | ARS5.2a | sf0510583389 | 5 | 10583389 | 3.5E-09 | 2.1 |  |  |  |  |
 | ARS6.4 | sf0619595095 | 6 | 19595095 | 3.1E-09 | 4.2 |  |  |  |  |
 | ARS7.3 | sf0708015120 | 7 | 8015120 | 2.3E-09 | 4.3 |  |  | qSD7–1 | [79] |
 | ARS8.3 | sf0803353408 | 8 | 3353408 | 1.3E-08 | 8.3 | OsLHY | 11 |  |  |
 | ARS9.3 | sf0922932869 | 9 | 22932869 | 6.1E-09 | 2.5 |  |  |  |  |
 | ARS11.6 | sf1122384837 | 11 | 22384837 | 2E-07 | 8.7 |  |  | qDOR11–4 | [80] |
 | ARS12.3 | sf1223239793 | 12 | 23239793 | 6E-08 | 0.5 | OsBOR1 | −20 | qSD12 | [79] |