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Table 4 Animal-specific imputation accuracy (rcorrected) of G0 for three groups depending on their direct ancestors in the reference population Ref62

From: Accuracy of imputation using the most common sires as reference population in layer chickens

MAF1 class

GR_S2 (N 3 = 34)

GR_MGS4 (N = 23)

GR_SMGS5 (N = 310)

0.008–0.1

0.80

0.79

0.80

0.1–0.2

0.89

0.90

0.89

0.2–0.3

0.90

0.92

0.91

0.3–0.4

0.93

0.93

0.92

0.4–0.5

0.91

0.91

0.89

3K to 60K scenario

0.62

0.62

0.64

  1. 1 Minor allele frequency
  2. 2 Animals who had just their sire (S) in the reference population
  3. 3 N is the number of animals
  4. 4 Animals who had just their maternal grand sire (MGS) in the reference population
  5. 5 Animals who had both their sire and maternal grandsire (SMGS) in the reference population
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BMC Genomic Data

ISSN: 2730-6844

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