Wakefield MJ, Graves JAM: The kangaroo genome-leaps and bounds in comparative genomics. EMBO Rep. 2003, 4: 143-147. 10.1038/sj.embor.embor739.
Article
PubMed Central
CAS
PubMed
Google Scholar
Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, Duke S, Garber M, Gentles AJ, Goodstadt L, Heger A, Jurka J, Kamal M, Mauceli E, Searle SMJ, Sharpe T, Baker ML, Batzer MA, Benos PV, Belov K, Clamp M, Cook A, Cuff J, Das R, Davidow L, Deakin JE, Fazzari MJ, Glass JL, Grabherr M, Greally JM, Gu WJ: Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature. 2007, 447: 167-177. 10.1038/nature05805.
Article
CAS
PubMed
Google Scholar
Graves JAM: Marsupial genome sequencing. Marsupial genetics and genomics. Edited by: Deakin JE, Waters PD, Graves JAM. 2010, Sydney, Berlin: Springer, 117-119.
Google Scholar
Hayman DL: Marsupial cytogenetics. Aust J Zool. 1990, 37: 331-349.
Article
Google Scholar
Rens W, O'Brien PCM, Yang F, Graves JAM, Ferguson-Smith MA: Karyotype relationships between four distantly related marsupials revealed by reciprocal chromosome painting. Chromosome Research. 1999, 7: 461-474. 10.1023/A:1009249813617.
Article
CAS
PubMed
Google Scholar
Mohammadi A, Delbridge ML, Waters PD, Graves JAM: Conservation of a chromosome arm in two distantly related marsupial species. Cytogenet Genome Res. 2009, 124: 147-150. 10.1159/000207522.
Article
CAS
PubMed
Google Scholar
Zenger KR, McKenzie LM, Cooper DW: The first comprehensive genetic linkage map of a marsupial: the tammar wallaby (Macropus eugenii). Genetics. 2002, 162: 321-330.
PubMed Central
CAS
PubMed
Google Scholar
McKenzie LM, Collet C, Cooper DW: Use of a subspecies cross for efficient development of a linkage map for a marsupial mammal, the tammar wallaby (Macropus eugenii). Cytogenet Cell Genet. 1993, 64: 264-267. 10.1159/000133590.
Article
CAS
PubMed
Google Scholar
Sankovic N, Bawden W, Martyn J, Graves JAM, Zuelke K: Construction of a marsupial bacterial artificial chromosome library from the model Australian marsupial, the tammar wallaby (Macropus eugenii). Aust J Zool. 2006, 53: 389-393.
Article
Google Scholar
Edwards KJ, Barker JHA, Daly A, Jones C, Karp A: Microsatellite libraries enriched for several microsatellite sequences in plants. BioTechniques (Euro Edition). 1996, 20 (5): 758-760.
CAS
Google Scholar
Python. [http://www.python.org]
MacDonald AJ, Sankovic N, Sarre SD, Fitzsimmons NN, Wakefield MJ, Graves JAM, Zenger KR: Y chromosome microsatellite markers identified from the tammar wallaby (Macropus eugenii) and their amplification in three other macropod species. Mol Ecol Notes. 2006, 6: 1202-1204. 10.1111/j.1471-8286.2006.01491.x.
Article
CAS
Google Scholar
Margulies EH, Cooper GM, Asimenos G, Thomas DJ, Dewey CN, Siepel A, Birney E, Keefe D, Schwartz AS, Hou MM, Taylor J, Nikolaev S, Montoya-Burgos JI, Loytynoja A, Whelan S, Pardi F, Massingham T, Brown JB, Bickel P, Holmes I, Mullikin JC, Ureta-Vidal A, Paten B, Stone EA, Rosenbloom KR, Kent WJ, Antonarakis SE, Batzoglou S, Goldman N, Hardison R: Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Res. 2007, 17: 760-774. 10.1101/gr.6034307.
Article
PubMed Central
CAS
PubMed
Google Scholar
Margulies EH, Maduro VVB, Thomas PJ, Tomkins JP, Amemiya CT, Luo MZ, Green ED: Comparative sequencing provides insights about the structure and conservation of marsupial and monotreme genomes. Proc Natl Acad Sci USA. 2005, 102: 3354-3359. 10.1073/pnas.0408539102.
Article
PubMed Central
CAS
PubMed
Google Scholar
Deakin J, Koina E, Waters P, Doherty R, Patel V, Delbridge M, Dobson B, Fong J, Hu Y, van den Hurk C, Pask A, Shaw G, Smith C, Thompson K, Wakefield M, Yu H, Renfree M, Marshall Graves J: Physical map of two tammar wallaby chromosomes: a strategy for mapping in non-model mammals. Chromosome Research. 2008, 16: 1159-1175. 10.1007/s10577-008-1266-y.
Article
CAS
PubMed
Google Scholar
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol. 1990, 215: 403-410.
Article
CAS
PubMed
Google Scholar
Huang XQ, Madan A: CAP3: A DNA sequence assembly program. Genome Res. 1999, 9: 868-877. 10.1101/gr.9.9.868.
Article
PubMed Central
CAS
PubMed
Google Scholar
Macdonald AJ, Sarre SD, Fitzsimmons NN, Graves JAM: Chromosome-specific microsatellites from the tammar wallaby X chromosome and chromosome 2. Mol Ecol Notes. 2007, 7: 1063-1066. 10.1111/j.1471-8286.2007.01777.x.
Article
CAS
Google Scholar
Rozen S, Skaletsky H: Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol. 2000, 132: 365-386.
CAS
PubMed
Google Scholar
Boutin-Ganache I, Raposo M, Raymond M, Deschepper CF: M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele-sizing methods. BioTechniques. 2001, 31: 24-28.
CAS
PubMed
Google Scholar
Vogl C, Xu SZ: Multipoint mapping of viability and segregation distorting loci using molecular markers. Genetics. 2000, 155: 1439-1447.
PubMed Central
CAS
PubMed
Google Scholar
Whitkus R: Genetics of adaptive radiation in Hawaiian and Cook Islands species of Tetramolopium (Asteraceae). II. Genetic linkage map and its implications for interspecific breeding barriers. Genetics. 1998, 150: 1209-1216.
PubMed Central
CAS
PubMed
Google Scholar
Chetelat RT, Meglic V, Cisneros P: A genetic map of tomato based on BC1 Lycopersicon esculentum × Solanum lycopersicoides reveals overall synteny but suppressed recombination between these homeologous genomes. Genetics. 2000, 154: 857-867.
PubMed Central
CAS
PubMed
Google Scholar
Benjamini Y, Hochberg Y: Controlling the false discovery rate-a practical and powerful approach to multiple testing. J R Stat Soc Ser B-Methodol. 1995, 57: 289-300.
Google Scholar
de Givry S, Bouchez M, Chabrier P, Milan D, Schiex T: CAR(H)(T)AGene: multipopulation integrated genetic and radiation hybrid mapping. Bioinformatics. 2005, 21: 1703-1704. 10.1093/bioinformatics/bti222.
Article
CAS
PubMed
Google Scholar
Dempster AP, Laird NM, Rubin DB: Maximum likelihood from incomplete data via EM algorithm. J R Stat Soc Ser B-Methodol. 1977, 39: 1-38.
Google Scholar
Lander E, Abrahamson J, Barlow A, Daly M, Lincoln S, Newburg L, Green P: MAPMAKER a computer package for constructing genetic-linkage maps. Cytogenet Cell Genet. 1987, 1 (2): 174-181.
CAS
Google Scholar
Ott J: Analysis of Human Genetic Linkage. 1999, Baltimore: Johns Hopkins University Press, 3
Google Scholar
Deakin JE, Siddle HV, Cross JGR, Belov K, Graves JAM: Class I genes have split from the MHC in the tammar wallaby. Cytogenet Genome Res. 2007, 116: 205-211. 10.1159/000098188.
Article
CAS
PubMed
Google Scholar
Alsop AE, Miethke P, Rofe R, Koina E, Sankovic N, Deakin JE, Haines H, Rapkins RW, Graves JAM: Characterizing the chromosomes of the Australian model marsupial Macropus eugenii (tammar wallaby). Chromosome Research. 2005, 13: 627-636. 10.1007/s10577-005-0989-2.
Article
CAS
PubMed
Google Scholar
Graves JAM: DNA synthesis in chromosomes of cultured leucocytes from two marsupial species. Exp Cell Res. 1967, 46: 37-57. 10.1016/0014-4827(67)90407-7.
Article
CAS
PubMed
Google Scholar
de Almeida MC, Campaner C, Cella DM: Karyotype characterization, constitutive heterochromatin and nucleolus organizer regions of Paranaita opima (Coleoptera, Chrysomelidae, Alticinae). Genet Mol Biol. 2006, 29: 475-481. 10.1590/S1415-47572006000300013.
Article
CAS
Google Scholar
Dib C, Faure S, Fizames C, Samson D, Drouot N, Vignal A, Millasseau P, Marc S, Hazan J, Seboun E, Lathrop M, Gyapay G, Morissette J, Weissenbach J: A comprehensive genetic map of the human genome based on 5,264 microsatellites. Nature. 1996, 380: 152-154. 10.1038/380152a0.
Article
CAS
PubMed
Google Scholar
Dietrich WF, Miller J, Steen R, Merchant MA, DamronBoles D, Husain Z, Dredge R, Daly MJ, Ingalls KA, Oconnor TJ, Evans CA, DeAngelis MM, Levinson DM, Kruglyak L, Goodman N, Copeland NG, Jenkins NA, Hawkins TL, Stein L, Page DC, Lander ES: A comprehensive genetic map of the mouse genome. Nature. 1996, 380: 149-152. 10.1038/380149a0.
Article
CAS
PubMed
Google Scholar
Ihara N, Takasuga A, Mizoshita K, Takeda H, Sugimoto M, Mizoguchi Y, Hirano T, Itoh T, Watanabe T, Reed KM, Snelling WM, Kappes SM, Beattie CW, Bennett GL, Sugimoto Y: A comprehensive genetic map of the cattle genome based on 3802 microsatellites. Genome Res. 2004, 14: 1987-1998. 10.1101/gr.2741704.
Article
PubMed Central
CAS
PubMed
Google Scholar
Archibald AL: The PiGMaP consortium linkage map of the domestic pig (Sus scrofa). Anim Genet. 1994, 25: 44-
Google Scholar
Bennett JH, Hayman DL, Hope RM: Novel sex-differences in linkage values and meiotic chromosome behavior in a marsupial. Nature. 1986, 323: 59-60. 10.1038/323059a0.
Article
CAS
PubMed
Google Scholar
Samollow PB, Gouin N, Miethke P, Mahaney S, Kenney M, VandeBerg J, Graves JAM, Kammerer C: A microsatellite-based, physically anchored linkage map for the gray, short-tailed opossum (Monodelphis domestica). Chromosome Research. 2007, 15: 269-282.
CAS
PubMed
Google Scholar
Samollow PB, Kammerer CM, Mahaney SM, Schneider JL, Westenberger SJ, VandeBerg JL, Robinson ES: First-generation linkage map of the gray, short-tailed opossum, Monodelphis domestica, reveals genome-wide reduction in female recombination rates. Genetics. 2004, 166: 307-329. 10.1534/genetics.166.1.307.
Article
PubMed Central
CAS
PubMed
Google Scholar
van Oorschot RAH, Porter PA, Kammerer CM, Vandeberg JL: Severely reduced recombination in females of the south-American marsupial Monodelphis domestica. Cytogenet Cell Genet. 1992, 60: 64-67. 10.1159/000133297.
Article
CAS
PubMed
Google Scholar
Samollow PB, Deakin JE, Waters PD, Graves JAM: Marsupial Linkage Maps. Marsupial genetics and genomics. 2010, 75-99.
Chapter
Google Scholar
Hayman DL, Moore HDM, Evans EP: Further evidence of novel sex-differences in chiasma distribution in marsupials. Heredity. 1988, 61: 455-458. 10.1038/hdy.1988.138.
Article
Google Scholar
Hayman DL, Rodger JC: Meiosis in male and female Trichosurus vulpecula (marsupialia). Heredity. 1990, 64: 251-254. 10.1038/hdy.1990.30.
Article
Google Scholar
Hayman DL, Smith MJ, Rodger JC: A comparative-study of chiasmata in male and female Bettongia penicillata (marsupialia). Genetica. 1990, 83: 45-49.
Google Scholar
McKenzie LM, Poole WE, Collet C, Cooper DW: Higher female than male recombination rates in a marsupial mammal, the tammar vallaby (Macropus eugenii). Cytogenet Cell Genet. 1995, 68: 64-66. 10.1159/000133891.
Article
CAS
PubMed
Google Scholar
Cheng YY, Wakefield M, Siddle HV, Coggill PC, Herbert CA, Beck S, Belov K, Eldridge MDB: Isolation and characterization of 10 MHC Class I-associated microsatellite loci in tammar wallaby (Macropus eugenii). Mol Ecol Resour. 2009, 9: 346-349. 10.1111/j.1755-0998.2008.02401.x.
Article
CAS
PubMed
Google Scholar