Table 2 Genes in the chloroplast genome of C. tetradactylus
From: Chloroplast genome of Calamus tetradactylus revealed rattan phylogeny
Category | Gene group | Region | Gene name in each region |
|---|---|---|---|
Genes for photosynthesis | Subunits of photosystem I | LSC | psaA, psaB, psaI, psaJ |
SSC | psaC | ||
Subunits of photosystem II | LSC | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
Subunits of ATP synthase | LSC | atpA, atpB, atpE, atpF, atpH, atpI | |
Subunits of NADH-dehydrogenase | LSC | ndhC, ndhJ, ndhK | |
SSC | ndhA, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI | ||
IRa & IRb | ndhB | ||
Subunits of cytochrome b/f complex | LSC | petA, petB, petD, petG, petL, petN | |
Subunits of rubisco | LSC | rbcL | |
Self replication | Large subunit of ribosome | LSC | rpl14, rpl16, rpl20, rpl22, rpl33, rpl36 |
SSC | rpl32 | ||
IRa & IRb | rpl2, rpl23 | ||
Small subunit of ribosome | LSC | rps2, rps3, rps4, rps8, rps11, rps14, rps16, rps18 | |
SSC | rps15 | ||
IRa & IRb | rps7, rps12, rps19 | ||
DNA dependent RNA polymerase | LSC | rpoA, rpoB, rpoC1, rpoC2 | |
Ribosomal RNAs | IRa & IRb | rrn4.5S, rrn5S, rrn16S, rrn23S | |
Transfer RNAs | LSC | trnP-UGG, trnW-CCA, trnM-CAU, trnV-UAC, trnF-GAA, trnL-UAA, trnT-UGU, trnS-GGA, trnfM-CAU, trnG-GCC, trnS-UGA, trnT-GGU, trnE-UUC, trnY-GUA, trnD-GUC, trnC-GCA, trnR-UCU, trnG-UCC, trnS-GCU, trnQ-UUG, trnK-UUU | |
SSC | trnL-UAG | ||
IRa & IRb | trnA-UGC, trnH-GUG, trnI-CAU, trnL-CAA, trnV-GAC, trnI-GAU, trnR-ACG, trnN-GUU | ||
Other genes | Maturase | LSC | matK |
Protease | LSC | clpP | |
Envelop membrane protein | LSC | cemA | |
Subunit of Acetyl-CoA-carboxylase | LSC | accD | |
c-type cytochrom synthesis gene | SSC | ccsA | |
Translational initiation factor | LSC | infA | |
Unkown | Conserved open reading frames | LSC | ycf3, ycf4 |
SSC | ycf1 | ||
IRa & IRb | ycf2 |