Fig. 1
From: Genetic variation in bovine LAP3 and SIRT1 genes associated with fertility traits in dairy cattle
Genetic variations and haplotype analysis of the LAP3 gene in dairy cattle. (a) Schematic representation of the list and location of single nucleotide polymorphisms (SNPs) sites and major haplotype analysis inferred across seven SNPs in the promoter region of LAP3 gene. ATG: Transcription start site. Box filled with purple is coding and non-coding regions. Numbers at the bottom indicate SNP ID, while table shows the nucleotide sequence of SNPs present in Hap_1 (haplotype 1), Hap_2 (haplotype 2), Hap_3 (haplotype 3) and Hap_4 (haplotype 4) of LAP3 gene with their population frequency (Freq: frequency) at the right. (b) Pairwise linkage disequilibrium (LD) analysis of SNPs located on promoter region of LAP3 gene. There exists one LD block composed of three SNPs and block definitions are based on the Gabriel et al. default criteria. The values in the boxes are pairwise SNP correlations (D). (c) Bar plots for least square mean values contrasting different haplotype combinations with AFC trait in dairy cattle. Error bars represent standard error. Numbers inside the columns indicate least square mean values of each haplotype combination for the trait. (d) Bar plots for least square mean values contrasting different haplotype combinations with CI and DO traits in dairy cattle. Error bars represent standard error. Numbers inside the columns indicate least square mean values of each haplotype combination for the traits