Table 1 Overview of datafiles/datasets

DataFile 1

Table S1, ECC445 – Antibiotic resistance profile

MS Excel file (.xlsx)

Figshare, https://doi.org/10.6084/m9.figshare.21294888 [8]

DataFile 2

Script S1, Analysis script of E. chengduensis

Bash file (.bash)

Figshare, https://doi.org/10.6084/m9.figshare.22041197 [9]

DataFile 3

Table S2, ECC445 – Quast and short BUSCO summary

Normal text file (.txt)

Figshare, https://doi.org/10.6084/m9.figshare.21294882 [14]

DataFile 4

Table S3, E. chengduensis metadata from NCBI and quality control criteria

MS Excel file (.xlsx)

Figshare, https://doi.org/10.6084/m9.figshare.21294903 [15]

DataFile 5

Alignment S1, Roary – E. chengduensis core-gene alignment

Fasta file (.fasta)

Figshare, https://doi.org/10.6084/m9.figshare.22041257 [16]

DataFile 6

MLTree S1, IQ-TREE – Maximum likelihood phylogenetic tree of E. chengduensis

Newick tree format (.nhx)

Figshare, https://doi.org/10.6084/m9.figshare.22041293 [17]

DataFile 7

Figure S1, Maximum likelihood phylogenetic tree of E. chengduensis

Portable Document Format file (.pdf)

Figshare, https://doi.org/10.6084/m9.figshare.21294879 [18]

DataFile 8

Table S4, ECC445 – PathogenFinder summary

Normal text file (.txt)

Figshare, https://doi.org/10.6084/m9.figshare.21294915 [19]

DataFile 9

Table S5, ECC445 – CrisprCasFinder summary

Tab-separated values (.tsv)

Figshare, https://doi.org/10.6084/m9.figshare.21294924 [20]

DataFile 10

Table S6, CRISPR spacers comparison

MS Excel file (.xlsx)

Figshare, https://doi.org/10.6084/m9.figshare.21294933 [21]

DataSet 1

Partial hsp60 coding sequence of the ECC445 strain

Fasta file(.fasta)

NCBI Nucleotide, https://identifiers.org/nucleotide:OM687483 [10]

DataSet 2

Illumina reads of the ECC445 strain

SRA file (.sra)

NCBI Sequence Read Archive, https://identifiers.org/ncbi/insdc.sra:SRR16640525 [22]

DataSet 3

Annotated assembly of the ECC445 strain

Fasta file (.fasta)

NCBI Nucleotide, https://identifiers.org/nucleotide:JAKLRZ000000000 [23]