Table 1 Overview of data files/data sets
From: Draft genomes of three closely related low light-adapted Prochlorococcus
Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
Dataset 1a | Draft genome for Prochlorococcus P1344 | Fasta sequence files (.fsa) and Genbank flatfile annotations (.gbff) | NCBI Genbank: JABBYR000000000.1 https://identifiers.org/nucleotide:JABBYR000000000.1 [21] |
Dataset 1b | Draft genome for Prochlorococcus P1361 | Fasta sequence files (.fsa) and Genbank flatfile annotations (.gbff) | NCBI Genbank: JABBYP000000000.1 https://identifiers.org/nucleotide:JABBYP000000000.1 [22] |
Dataset 1c | Draft genome for Prochlorococcus P1363 | Fasta sequence files (.fsa) and Genbank flatfile annotations (.gbff) | NCBI Genbank: JABBYQ000000000.1 https://identifiers.org/nucleotide:JABBYQ000000000.1 [23] |
Dataset 2a | Raw sequencing reads for P1344 enrichment | Fastq sequence file (.fastq) | NCBI Sequence Read Archive: SRR11497176 https://identifiers.org/insdc.sra:SRR11497176 [31] |
Dataset 2b | Raw sequencing reads for P1361 enrichment | Fastq sequence file (.fastq) | NCBI Sequence Read Archive: SRR11497178 https://identifiers.org/insdc.sra:SRR11497178 [32] |
Dataset 2c | Raw sequencing reads for P1363 enrichment | Fastq sequence file (.fastq) | NCBI Sequence Read Archive: SRR11497177 https://identifiers.org/insdc.sra:SRR11497177 [33] |
Dataset 3a | Prokka genome annotations for Prochlorococcus P1344 | Genbank flatfile annotations (.gbf) | figshare: https://doi.org/10.6084/m9.figshare.12675410 [26] |
Dataset 3b | Prokka genome annotations for Prochlorococcus P1361 | Genbank flatfile annotations (.gbf) | figshare: https://doi.org/10.6084/m9.figshare.12675410 [26] |
Dataset 3c | Prokka genome annotations for Prochlorococcus P1363 | Genbank flatfile annotations (.gbf) | figshare: https://doi.org/10.6084/m9.figshare.12675410 [26] |
Dataset 3d | Prokka genome annotations for Prochlorococcus MIT1227 | Genbank flatfile annotations (.gbf) | figshare: https://doi.org/10.6084/m9.figshare.12675410 [26] |
Dataset 3e | Prokka genome annotations for Prochlorococcus MIT1312 | Genbank flatfile annotations (.gbf) | figshare: https://doi.org/10.6084/m9.figshare.12675410 [26] |
Dataset 3f | Prokka genome annotations for Prochlorococcus MIT1327 | Genbank flatfile annotations (.gbf) | figshare: https://doi.org/10.6084/m9.figshare.12675410 [26] |
Dataset 4a | Enrichment assembly for P1344 | Fasta sequence file (.fasta) | figshare: https://doi.org/10.6084/m9.figshare.12675410 [26] |
Dataset 4b | Enrichment assembly for P1361 | Fasta sequence file (.fasta) | figshare: https://doi.org/10.6084/m9.figshare.12675410 [26] |
Dataset 4c | Enrichment assembly for P1363 | Fasta sequence file (.fasta) | figshare: https://doi.org/10.6084/m9.figshare.12675410 [26] |
Data file 1 | Detailed methods | Document (.pdf) | figshare: https://doi.org/10.6084/m9.figshare.12675410 [26] |
Data file 2 | Genome summary information | Microsoft Excel file (.xlsx) | figshare: https://doi.org/10.6084/m9.figshare.12675410 [26] |
Data file 3 | Enrichment contig characteristics | Microsoft Excel file (.xlsx) | figshare: https://doi.org/10.6084/m9.figshare.12675410 [26] |
Data file 4 | Genome contig characteristics | Microsoft Excel file (.xlsx) | figshare: https://doi.org/10.6084/m9.figshare.12675410 [26] |
Data file 5 | Annotation information | Microsoft Excel file (.xlsx) | figshare: https://doi.org/10.6084/m9.figshare.12675410 [26] |
Data file 6 | Overview of other organisms in enrichment BLAST results | Microsoft Excel file (.xlsx) | figshare: https://doi.org/10.6084/m9.figshare.12675410 [26] |
Data file 7 | Genome and enrichment bin completeness and taxonomy | Microsoft Excel file (.xlsx) | figshare: https://doi.org/10.6084/m9.figshare.12675410 [26] |
Data file 8 | Protein ortholog clusters for identical ITS group | Microsoft Excel file (.xlsx) | figshare: https://doi.org/10.6084/m9.figshare.12675410 [26] |
Data file 9 | Genome comparisons for identical ITS group | Microsoft Excel file (.xlsx) | figshare: https://doi.org/10.6084/m9.figshare.12675410 [26] |