Table 3 Alignment of RNA-Seq derived MHC class I alleles with a genomic de novo assembly from the same individual for three animals
Rambouillet (BENZ2616) accession SAMN17575729; assembly GCF_016772045.1 | ||||||||
allel | exon 2 | intron 2 | exon 3 | |||||
| Â | start | End | identity | length [bp] | start | end | identity | |
LfL2082 | 27177386 | 27177657 | 100% | 196 | 27177853 | 27178129 | 100% | |
LfL2083 | 27748,145 | 27747874 | 100% | 199 | 27747675 | 27747399 | 100% | |
LfL2084 | 27664922 | 27664651 | 89% | 197 | 27664454 | 27664178 | 91% | |
LfL2085 | 27707857 | 27707586 | 93% | 200 | 27707386 | 27707110 | 93% | |
LfL2086 | 27707857 | 27707586 | 91% | 200 | 27,707,386 | 27707110 | 92% | |
LfL2087 | 26,983,972 | 26984243 | 100% | 194 | 26984437 | 26984713 | 100% | |
LfL2088 | 27664922 | 27664651 | 100% | 197 | 27664454 | 27664178 | 100% | |
LfL2089 | 27707857 | 27707586 | 100% | 200 | 27707386 | 27707110 | 100% | |
LfL2090 | 27707857 | 27707586 | 99% | 200 | 27707386 | 27707110 | 98% | |
HuSheep accession SAMN13678651; assembly ASM1117029v1 | ||||||||
allel | exon 2 | intron 2 | exon 3 | |||||
| Â | start | End | identity | length [bp] | start | end | identity | |
LfL2091 | 30275282 | 30275011 | 100% | 193 | 30274818 | 30274542 | 100% | |
LfL2092 | 30347015 | 30346744 | 100% | 199 | 30346545 | 30346269 | 100% | |
LfL2093 | 30204669 | 30204397 | 100% | 201 | 30204196 | 30203919 | 100% | |
LfL2094 | 29123944 | 29124215 | 94% | 271 | 29123944 | 29124215 | 95% | |
LfL2015 | 29705916 | 29706187 | 100% | 196 | 29706383 | 29706659 | 100% | |
LfL2095 | 29421461 | 29421732 | 96% | 195 | 29421927 | 29422203 | 89% | |
LfL2096 | 20406404 | 20406675 | 100% | 221 | 20406896 | 20407172 | 100% | |
Ovis ammon polii x Ovis ariesaccession SAMN26012028 assembly GCA_023701675.1 | ||||||||
allel | exon 2 | intron 2 | exon 3 | |||||
| Â | start | End | identity | length [bp] | start | end | identity | |
LfL2097 | 34975557 | 34975828 | 100% | 195 | 34976023 | 34976300 | 100% | |
LfL2098 | 35749893 | 35749622 | 90% | 197 | 35749425 | 35749149 | 90% | |
LfL2099 | 35749893 | 35749622 | 91% | 197 | 35749425 | 35749149 | 91% | |
LfL2100 | 35786189 | 35785918 | 100% | 195 | 35785723 | 35785447 | 100% | |
LfL2101 | 35019521 | 35019791 | 100% | 186 | 35019977 | 35020255 | 100% | |
LfL2102 | 35786189 | 35785918 | 95% | 195 | 35785723 | 35785555 | 92% | |
LfL2103 | 35855847 | 35855576 | 100% | 194 | 35855382 | 35855106 | 100% | |
LfL2104 | 35855847 | 35855576 | 89% | 194 | 35855382 | 35855106 | 95% | |
LfL2105 | 34975557 | 34975828 | 94% | 271 | 34975557 | 34975828 | 94% | |