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Table 1 Ovine MHC class I allele from 16 individuals

From: Uncovering novel MHC alleles from RNA-Seq data: expanding the spectrum of MHC class I alleles in sheep

Name

Acc.vera

Identity

Species

Ovar-b

Identity

Transcriptionc

Classd

ne

U03094.1

U03094.1

100,0%

oa

N*18:01

95,6%

**

cl

3/0

LfL2003

XM_018038884.1

94,0%

ch

N*06:01

92,8%

**

cl

3/0

LfL2005

DQ121186.1

95,3%

bt

N*13:02

95,1%

**

cl

2/0

JQ824375.1

JQ824375.1

100,0%

oa

N*14:01

94,2%

**

cl

1/0

N*11:01

GQ150751.1

100,0%

oa

N*11:01

100,0%

**

cl

1/0

LfL2011

U03094.1

96,4%

oa

N*05:01

95,4%

**

cl

2/0

LfL2012

AJ874675.2

98,0%

oa

N*07:01

98,0%

**

cl

1/0

LfL2072

LT984572.1

99,3%

oa

N*12:01

99,3%

**

cl

1/0

LfL2014

EF489538.1

93,4%

oa

N*10:01

93,4%

***

cl

1/0

LfL2016

KC733413.1

98,4%

oa

N*17:01

98,4%

***

cl

1/0

LfL2020

NM_001308452.1

96,5%

oa

N*05:01

96,5%

***

cl

0/3

LfL2021

U03092.1

96,7%

oa

N*01:01

91,6%

**

cl

0/4

LfL2022

LT984575.1

94,5%

oa

N*26:01

94,0%

**

cl

0/4

LfL2024

LT984561.1

98,9%

oa

N*24:01

93,3%

**

cl

0/2

LfL2025

KX858769.1

99,8%

oa

N*11:01

94,5%

***

cl

0/1

LfL2026

KC733413.1

95,6%

oa

N*17:01

95,4%

**

cl

0/1

LfL2027

AM181175.1

96,0%

oa

N*02:01

99,8%

**

cl

0/2

LfL2028

NM_001130934.1

95,1%

oa

N*11:01

95,1%

***

cl

0/1

LfL2031

AJ874679.2

95,8%

oa

N*04:01

95,8%

***

cl

1/1

LT984558.1

LT984558.1

100,0%

oa

N*10:01

93,3%

***

cl

0/1

LfL2034a

EF489513.1

98,9%

oa

N*26:01

92,9%

***

cl

0/1

LfL2034b

EF489513.1

99,0%

oa

N*26:01

93,1%

***

cl

0/1

LfL2035

EF489519.1

97,3%

oa

N*20:01

95,4%

***

cl

0/1

LfL2037

KC733418.1

94,9%

oa

N*13:02

94,9%

***

cl

1/1

LfL2041

KX858768.1

97,6%

oa

N*20:01

97,3%

***

cl

0/1

LfL2044

LT984575.1

93,3%

oa

N*26:01

92,7%

**

cl

0/1

LfL2047

U03092.1

99,1%

oa

N*26:01

92,3%

**

cl

0/1

LfL2052

LT984576.1

92,7%

oa

N*27:01

92,7%

**

cl

1/0

LfL2054

KX858769.1

94,7%

oa

N*04:01

94,0%

**

cl

1/0

LfL2055

LT984572.1

98,9%

oa

N*12:01

98,9%

**

cl

1/0

LfL2059

EF569216.1

93,1%

ch

N*05:01

93,1%

**

cl

0/1

LfL2064

XM_018038832.1

94,9%

ch

N*10:01

84,8%

*

cl

0/1

LfL2043

EF569216.1

94,7%

ch

N*05:01

94,2%

**

nc

0/1

LfL2004

JQ031569.1

93,2%

bt

N*25:01

93,1%

**

nc

2/0

LfL2001

NM_001308586.1

98,7%

oa

N*50:03

98,7%

*

nc

1/2

LfL2013a

U03093.1

99,8%

oa

N*50:03

99,3%

*

nc

1/0

U03093.1

U03093.1

100,0%

oa

N*50:03

99,5%

*

nc

0/1

LfL2013e

NM_001308586.1

99,0%

oa

N*50:03

99,8%

*

nc

0/1

LfL2023

NM_001308586.1

99,6%

oa

N*50:03

98,4%

*

nc

0/2

N*50:01

AJ874677.2

100,0%

oa

N*50:01

100,0%

*

nc

0/1

LfL2057

NM_001308586.1

99,0%

oa

N*50:03

99,1%

*

nc

0/1

LfL2060

AJ874677.2

99,2%

oa

N*50:01

99,2%

*

nc

1/0

LfL2006

KX858770.1

92,6%

oa

N*19:01

92,2%

*

nc

3/0

LfL2008

LT984572.1

98,7%

oa

N*12:01

98,7%

*

nc

1/0

LfL2015

XM_027958893.1

99,6%

oa

N*20:01

90,5%

*

nc

3/2

LfL2017

KX858770.1

99,6%

oa

N*24:01

97,6%

*

nc

1/0

LfL2036

XM_027958913.1

94,4%

oa

N*13:02

91,8%

*

nc

0/1

LfL2046a

XM_027958903.1

96,6%

oa

N*06:01

91,3%

*

nc

0/1

LfL2046b

XM_027958903.1

97,1%

oa

N*14:01

89,3%

*

nc

0/1

LfL2051

JQ031569.1

93,1%

oa

N*04:01

93,1%

*

nc

1/0

LfL2058

LT984572.1

99,1%

oa

N*12:01

99,1%

*

nc

0/1

LfL2082

XM_027958893.2

99,8%

oa

N*20:01

90,1%

*

nc

ra

LfL2083

KX858769.1

96,7%

oa

N*11:01

96,7%

***

cl

ra

LfL2084

EF489513.1

96,8%

oa

N*26:01

92,5%

***

cl

ra

LfL2085

KX858763.1

97,5%

oa

N*12:01

97,3%

**

cl

ra

LfL2086

KC733416.1

96,6%

oa

N*20:01

96,5%

***

cl

ra

LfL2087

XM_042237435.1

100,0%

oa

N*06:01

91,4%

*

nc

ra

LfL2088

XM_018038836.1

97,8%

oa

N*07:01

93,6%

*

nc

ra

LfL2089

XM_042237461.1

100,0%

oa

N*50:02

98,0%

**

nc

ra

LfL2090

XM_042237461.1

98,7%

oa

N*50:02

94,9%

**

nc

ra

LfL2091

DQ121186.1

97%

oa

N*27:01

94,2%

***

cl

hu

LfL2092

KX858764.1

93%

oa

N*25:01

93,4%

***

nc

hu

LfL2093

NM_001308586.1

99%

oa

N*50:03

99,1%

*

nc

hu

LfL2094

EF489538.1

94%

oa

N*10:01

94,5%

***

cl

hu

LfL2095

EF489537.1

97%

oa

N*09:01

93,1%

**

cl

hu

LfL2096

EF489516.1

99%

oa

N*10:01

85,8%

*

nc

hu

LfL2097

XM_027958908.2

99%

oa

N*07:01

93%

*

nc

cr

LfL2098

OL628782.1

94%

oa

N*13:02

89%

***

cl

cr

LfL2099

OL628783.1

95%

oa

N*25:01

92%

***

cl

cr

LfL2100

AJ874678.2

99%

oa

N*50:02

99%

*

nc

cr

LfL2101

XM_018038824.1

98%

ch

no find

ns

*

nc

cr

LfL2102

OL628814.1

93%

oa

N*19:01

92%

**

nc

cr

LfL2103

AJ874674.2

96%

oa

N*01:01

95%

***

cl

cr

LfL2104

AJ874682.2

93%

oa

N*50:00

93%

**

nc

cr

LfL2105

OL628806.1

99%

oa

N*50:03

98%

**

nc

cr

  1. aAccession number and version of the sequence with the highest score from the BLAST search against the Nucleotide collection (nt) at the NCBI followed by the identity in percent and the species (oa, ovis aries; bt, bos taurus; ch, capra hircus
  2. bClosest or identical ovine MHC class I allele from the IPD MHC database with the highest identity score followed by the identity in percent
  3. cTranscription level had been estimated from the number of reads aligned at position 260 bp (* < 1000, ** 1000–5000, *** > 5000 reads per allele)
  4. dPreliminary classification: cl, classical; nc, putative non-classical
  5. eNumber of animals carrying the allele (Texel x Scottish Blackface crossbreed/Merino); ra, Rambouillet (Benz2616); hu, Husheep;
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BMC Genomic Data

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