Table 4 Important SNPs detected of different traits by BLUP value
Number | SNP | Traits | Density a | Chr | Position(bp)b | Allele | bin | P-value | PVE (%) |
|---|---|---|---|---|---|---|---|---|---|
1 | Chr4_66017316 | RPR | L | 4 | 66,017,316 | C/T | 4.05 | 3.52E-05 | 16.10% |
| Â | Â | RPR | H | 4 | 66,017,316 | C/T | 4.05 | 8.47E-05 | 16.90% |
2 | Chr2_231360274 | TIL | L | 2 | 231,360,274 | C/G | 2.09 | 5.95E-05 | 19.56% |
| Â | Â | FIL | L | 2 | 231,360,274 | C/G | 2.09 | 2.27E-05 | 20.46% |
3 | Chr3_99647159 | TID | H | 3 | 99,647,159 | A/G | 3.04 | 4.86E-05 | 16.51% |
| Â | Â | FID | H | 3 | 99,647,159 | A/G | 3.04 | 3.19E-05 | 15.67% |
4 | Chr4_16211307 | TID | L | 4 | 16,211,307 | A/G | 4.03 | 6.74E-05 | 18.06% |
| Â | Â | FID | L | 4 | 16,211,307 | A/G | 4.03 | 2.05E-05 | 18.00% |
| Â | Â | TID | H | 4 | 16,211,307 | A/G | 4.03 | 2.51E-05 | 17.60% |
| Â | Â | FID | H | 4 | 16,211,307 | A/G | 4.03 | 1.45E-05 | 16.94% |
5 | Chr4_199957809 | TIL | L | 4 | 199,957,809 | A/T | 4.08 | 6.93E-05 | 19.26% |
| Â | Â | FIL | L | 4 | 199,957,809 | A/T | 4.08 | 6.35E-05 | 18.22% |
6 | Chr4_203233149 | TID | L | 4 | 203,233,149 | A/C | 4.08 | 3.66E-05 | 18.41% |
| Â | Â | FID | L | 4 | 203,233,149 | A/C | 4.08 | 3.39E-05 | 17.16% |
| Â | Â | TID | H | 4 | 203,233,149 | A/C | 4.08 | 3.56E-05 | 16.97% |
| Â | Â | FID | H | 4 | 203,233,149 | A/C | 4.08 | 2.03E-05 | 16.31% |
7 | Chr4_236385528 | TID | L | 4 | 236,385,528 | G/T | 4.09 | 2.25E-05 | 19.25% |
| Â | Â | FID | L | 4 | 236,385,528 | G/T | 4.09 | 1.29E-05 | 18.54% |
| Â | Â | FID | H | 4 | 236,385,528 | G/T | 4.09 | 5.61E-05 | 15.46% |
8 | Chr5_48630086 | TIL | H | 5 | 48,630,086 | C/T | 5.03 | 4.05E-05 | 20.21% |
| Â | Â | FIL | H | 5 | 48,630,086 | C/T | 5.03 | 6.16E-05 | 18.07% |
9 | Chr5_48630116 | TIL | H | 5 | 48,630,116 | A/G | 5.03 | 4.05E-05 | 20.21% |
| Â | Â | FIL | H | 5 | 48,630,116 | A/G | 5.03 | 6.16E-05 | 18.07% |
10 | Chr5_174286151 | TIL | H | 5 | 174,286,151 | C/T | 5.05 | 1.64E-05 | 20.70% |
| Â | Â | FIL | H | 5 | 174,286,151 | C/T | 5.05 | 7.84E-05 | 17.30% |
11 | Chr8_67356036 | TID | L | 8 | 67,356,036 | C/T | 8.03 | 2.08E-05 | 19.89% |
| Â | Â | FID | L | 8 | 67,356,036 | C/T | 8.03 | 6.39E-05 | 17.34% |
12 | Chr8_130686461 | TID | L | 8 | 130,686,461 | C/T | 8.05 | 1.11E-05 | 20.19% |
| Â | Â | FID | L | 8 | 130,686,461 | C/T | 8.05 | 1.46E-05 | 18.59% |
| Â | Â | TID | H | 8 | 130,686,461 | C/T | 8.05 | 1.17E-05 | 18.64% |
| Â | Â | FID | H | 8 | 130,686,461 | C/T | 8.05 | 6.09E-05 | 15.52% |
13 | Chr9_133921410 | TIL | H | 9 | 133,921,410 | C/G | 9.05 | 4.81E-05 | 21.01% |
| Â | Â | FIL | H | 9 | 133,921,410 | C/G | 9.05 | 5.93E-05 | 19.14% |
14 | Chr10_148095509 | FIL | L | 10 | 148,095,509 | A/T | 10.07 | 2.66E-05 | 19.75% |
| Â | Â | TIL | H | 10 | 148,095,509 | A/T | 10.07 | 9.83E-05 | 20.05% |