From: Parallel and private generalized suffix tree construction and query on genomic data
Data | Serial | Distributed | Shared | Hybrid | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 4 | 8 | 16 | 2 | 4 | 8 | 16 | 2 | 4 | 8 | 16 | |
Horizontal Partitioning | |||||||||||||
200 | 0.08 | 0.23 | 0.09 | 0.09 | 0.10 | 0.14 | 0.05 | 0.04 | 0.03 | 0.14 | 0.07 | 0.05 | 0.05 |
300 | 0.27 | 1.04 | 0.23 | 0.2 | 0.23 | 0.38 | 0.15 | 0.11 | 0.08 | 0.37 | 0.16 | 0.12 | 0.12 |
400 | 0.59 | 2.03 | 0.55 | 0.38 | 0.38 | 1.18 | 0.35 | 0.21 | 0.2 | 1.12 | 0.31 | 0.23 | 0.25 |
500 | 1.53 | 3.14 | 1.32 | 1.06 | 1.01 | 2.27 | 0.57 | 0.36 | 0.28 | 2.09 | 0.52 | 0.38 | 0.41 |
1000 | 14.55 | 16.23 | 8.34 | 6.31 | 6.09 | 17.38 | 5.56 | 3.27 | 2.28 | 17.14 | 4.18 | 3.12 | 3.08 |
Vertical Partitioning | |||||||||||||
200 | 0.08 | 0.19 | 0.08 | 0.05 | 0.03 | 0.16 | 0.07 | 0.04 | 0.02 | 0.14 | 0.05 | 0.03 | 0.02 |
300 | 0.27 | 0.56 | 0.28 | 0.17 | 0.09 | 0.48 | 0.22 | 0.16 | 0.08 | 0.39 | 0.13 | 0.10 | 0.06 |
400 | 0.59 | 1.41 | 1.05 | 0.36 | 0.16 | 1.44 | 1.01 | 0.34 | 0.19 | 1.21 | 0.32 | 0.21 | 0.13 |
500 | 1.53 | 3.07 | 1.49 | 1.08 | 0.37 | 3.18 | 1.49 | 1.08 | 0.36 | 2.35 | 0.58 | 0.40 | 0.24 |
1000 | 14.55 | 25.24 | 12.25 | 9.06 | 5.20 | 22.56 | 13.11 | 7.2 | 4.37 | 18.22 | 6.31 | 4.49 | 3.10 |