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Table 4 CpG islands identified in upstream and gene body regions for 19 MAGE genes in cattle

From: MAGE genes encoding for embryonic development in cattle is mainly regulated by zinc finger transcription factor family and slightly by CpG Islands

Gene Name

Promoter regiona

Gene body regiona

Start site

End site

Length

GC content

Start site

End site

Length

GC content

LOC113879741

503

1047

545

55%

1

953

953

53%

LOC113886694

730

1300

571

63%

197

717

521

59%

LOC113887965

357

1594

1238

59%

-

-

-

-

LOC113887980

656

1251

596

62%

-

-

-

-

LOC113888015

141

702

542

60%

-

-

-

-

LOC113891273

672

1314

643

58%

1

822

822

50%

LOC113889707

-

-

-

-

1

1837

1837

62%

LOC113887351

-

-

-

-

1

536

536

50%

  1. aCpG islands are identified by using Takai and Jones’ algorithm searched in 2 kb upstream of ATG and in gene body regions for 19 MAGE genes encoding for embryonic development in cattle
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BMC Genomic Data

ISSN: 2730-6844

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