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Table 1 The first five enriched GO/KEGG pathways of top ten modules identified by SNSVD on the CGP data where “P-value” denotes Benjamini-Hochberg adjusted P-value

From: Network-based cancer genomic data integration for pattern discovery

Module

Enriched GO/KEGG pathways

P-value

1

GO:0006952˜defense response

3.08e-12

1

GO:0001775˜cell activation

1.11e-10

1

GO:0045321˜leukocyte activation

2.55e-10

1

GO:0006955˜immune response

7.34e-10

1

GO:0042110˜T cell activation

1.42e-07

2

GO:0006955˜immune response

4.03e-12

2

GO:0006414˜translational elongation

1.28e-08

2

hsa03010:Ribosome

2.96e-08

2

hsa04662:B cell receptor signaling pathway

4.31e-08

2

GO:0001775˜cell activation

2.00e-07

3

GO:0006414˜translational elongation

2.11e-86

3

hsa03010:Ribosome

3.28e-81

3

GO:0006412˜translation

6.62e-57

3

GO:0042273˜ribosomal large subunit biogenesis

3.27e-04

3

GO:0042254˜ribosome biogenesis

2.38e-03

4

GO:0006836˜neurotransmitter transport

8.83e-06

4

GO:0030182˜neuron differentiation

3.50e-03

4

GO:0007269˜neurotransmitter secretion

6.71e-03

4

GO:0050767˜regulation of neurogenesis

1.79e-02

4

GO:0048667˜cell morphogenesis involved in neuron diff.

1.83e-02

6

GO:0042110˜T cell activation

8.05e-11

6

hsa04660:T cell receptor signaling pathway

3.35e-09

6

GO:0045321˜leukocyte activation

1.08e-08

6

GO:0001775˜cell activation

1.43e-08

6

GO:0046649˜lymphocyte activation

2.44e-08

7

GO:0051276˜chromosome organization

3.86e-10

7

GO:0006350˜transcription

7.90e-10

7

GO:0006325˜chromatin organization

1.98e-09

7

GO:0045449˜regulation of transcription

4.23e-08

7

GO:0008380˜RNA splicing

1.88e-07

9

hsa04080:Neuroactive ligand-receptor interaction

1.03e-04

10

GO:0006955˜immune response

1.61e-23

10

hsa05330:Allograft rejection

7.40e-16

10

hsa04940:Type I diabetes mellitus

5.44e-15

10

hsa05332:Graft-versus-host disease

1.46e-12

10

hsa04672:Intestinal immune network for IgA production

3.05e-11