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Table 2 Significant VIP variants in the Wa people compared with the other 26 populations without adjustment

From: Genetic analysis of pharmacogenomic VIP variants in the Wa population from Yunnan Province of China

SNP ID

Genes

p<0.05

EAS

AFR

AMR

EUR

SAS

CDX

CHB

CHS

JPT

KHV

ACB

ASW

ESN

GWD

LWK

MSL

YRI

CLM

MXL

PEL

PUR

CEU

FIN

GBR

IBS

TSI

BEB

GIH

ITU

PJL

STU

rs11572325

CYP2J2

 

0.306375642

   

1.02E-06*

5.45E-06*

1.90E-06*

4.42E-06*

2.08E-05*

8.09E-05*

2.75E-06*

0.005284096*

  

7.76E-06*

0.009360496*

6.62E-05*

0.066258015

0.023683277*

0.011905569*

  

0.298107259

  

rs10889160

CYP2J2

0.329164673

0.002444771*

0.028881237*

0.000294247*

0.040383079*

5.88E-19*

1.08E-10*

1.52E-21*

8.72E-15*

1.62E-16*

9.67E-19*

4.46E-21*

0.113681618

  

0.000148487*

0.130780521

9.14E-06*

0.248614483

0.006404332*

0.108048571

  

0.028992767*

0.271827376

 

rs1760217

DPYD

0.591174047

0.635254374

0.043390478*

0.285254147

0.098440081

0.000830268*

0.083572784

0.020342952*

1.07E-05*

0.001081997*

0.013652794*

5.51E-05*

0.00026507

0.424945255

0.003384269*

3.19E-06*

0.056397577

2.18E-05*

5.35E-05*

0.00022263

0.00048027*

0.002729039*

0.021913163*

9.86E-09*

1.10E-05*

3.54E-08*

rs1801159

DPYD

0.88117013

0.950798386

0.002842988*

0.238643736

0.223227528

0.001091502*

0.018913811*

0.028486512*

6.33E-08*

0.520772569

3.62E-07*

0.002338955*

0.090969695

0.648090677

2.14E-06*

0.118531739

0.007956605*

0.000828883*

0.022882805*

0.160795921

0.068964677

1.76E-05*

8.42E-06*

4.31E-10*

3.16E-06*

2.57E-08*

rs1801265

DPYD

0.052749931

0.469459751

0.537814287

0.14153267

0.75955499

1.55E-14*

9.57E-19*

7.19E-19*

7.68E-22*

2.18E-22*

1.80E-14*

5.20E-20*

1.97E-05*

3.98E-05*

0.036349573*

8.12E-07*

0.0582413

2.03E-09*

0.010507456*

0.000166496*

0.000111818*

0.004339857*

5.32E-12*

3.10E-10*

5.62E-09*

0.001731231*

rs5275

PTGS2

0.336758749

0.417665708

0.961588522

0.118298167

0.470903061

5.37E-24*

3.85E-17*

2.15E-28*

4.85E-23*

3.89E-24*

6.60E-27*

1.08E-28*

2.24E-08*

7.96E-06*

4.18E-08*

7.32E-05*

9.47E-08*

0.016894923*

0.000783464*

2.20E-05*

0.000269579*

3.18E-08*

8.54E-08*

1.31E-06*

2.86E-13*

7.33E-09*

rs20417

PTGS2

     

5.38E-29

1.81E-26

1.16E-37

3.26E-27

2.82E-24

3.93E-36

5.95E-33

2.31E-19

3.44E-19

6.57E-17

1.57E-18

5.14E-15

2.82E-09

2.64E-12

2.26E-13

2.04E-16

1.85E-15

1.81E-15

1.45E-14

1.54E-19

8.50E-18

rs12139527

CACNA1S

0.010930581*

0.005747244*

0.003350606*

0.001024703*

 

9.11E-34*

1.29E-29*

1.83E-41*

2.75E-43*

5.74E-36*

7.83E-41*

3.31E-41*

   

4.94E-08*

0.001983601*

0.003138048*

0.015381705*

0.002233347*

0.038502751*

 

0.229113935

 

0.214498852

0.205806221

rs3850625

CACNA1S

            

9.08E-10*

 

4.71E-09*

 

2.62E-07*

4.14E-16*

2.62E-12*

1.13E-07*

4.73E-09*

5.03E-13*

4.51E-25*

2.99E-17*

4.65E-16*

1.61E-13*

rs2306238

RYR2

0.243008296

0.511988338

0.32067139

0.291217242

0.427860312

2.93E-06*

0.001321721*

7.38E-09*

1.07E-07*

5.88E-07*

5.76E-08*

3.11E-07*

0.315347468

0.004033895*

0.000709533*

0.049208479*

0.594776616

0.767314427

0.934677486

0.948399042

0.944870157

0.468046737

0.533568812

0.00731298*

0.031525792*

0.012025534*

rs2231142

ABCG2

0.759304079

0.006272733*

0.18134526

0.001634302*

0.00036571*

2.96E-09*

0.006292525*

8.53E-11*

3.58E-10*

8.53E-11*

1.12E-07*

1.30E-11*

0.093444383

0.910555607

0.363795593

0.016893966*

0.04814984*

0.003955761*

0.197481137

0.000186352*

2.64E-05*

0.098393345

0.0001759*

0.016749365*

0.015307606*

0.00252365*

rs2231137

ABCG2

0.03195508*

2.53E-07*

1.10E-05*

4.49E-17*

0.0021976*

3.93E-29*

6.69E-25*

2.40E-29*

2.26E-33*

1.72E-21*

2.40E-22*

4.17E-30*

4.32E-18*

3.98E-05*

0.21099732

8.12E-07*

1.43E-31*

2.87E-24*

2.14E-30*

1.47E-30*

7.16E-27*

1.36E-10*

7.44E-19*

9.18E-24*

1.79E-22*

1.55E-14*

rs698

ADH1C

0.014000323*

0.063405752

0.252382783

0.258458735

0.077767236

0.313321517

0.224283945

0.281282137

0.039819211*

0.004885396*

0.063702796

0.080263228

6.40E-05*

7.96E-06*

0.001138652*

7.32E-05*

1.65E-21*

1.19E-20*

1.04E-15*

1.26E-08*

1.53E-09*

0.000640869*

2.30E-07*

4.56E-06*

8.44E-11*

6.86E-12*

rs776746

CYP3A5

1.44E-20*

1.5E-18*

1.25E-18*

1.82E-21*

5.24E-21*

1.18E-37*

1.94E-33*

3.90E-43*

2.02E-40*

2.85E-40*

8.23E-39*

4.59E-45*

2.21E-13*

3.44E-19*

1.43E-09*

1.57E-18*

4.33E-06*

2.47E-06*

6.55E-07*

8.03E-08*

3.20E-07*

3.69E-22*

3.61E-20*

5.26E-21*

1.44E-19*

1.24E-20*

rs2242480

CYP3A4

0.174181201

0.021891099*

0.023739907*

0.23406711

0.435345164

2.62E-23*

1.64E-15*

3.89E-36*

1.69E-28*

1.47E-36*

6.57E-33*

1.50E-30*

0.409092294

0.192100104

1.35E-07*

0.08254084

6.01E-14*

3.60E-12*

5.94E-12*

2.02E-09*

1.22E-11*

0.17415559

0.803974761

0.115551578

0.089908531

0.456718839

rs1805123

KCNH2

 

0.001573873*

          

0.000823584*

0.056854534

 

1.21E-05*

1.31E-06*

0.004686145*

1.77E-07*

3.87E-08*

2.29E-09*

2.02E-09*

1.52E-06*

2.17E-08*

0.00023004*

2.36E-05*

rs4646244

NAT2

0.908457449

0.610136371

0.315761804

0.54419548

0.005511981*

0.539375881

0.681282207

0.569019305

0.731729318

0.470793074

0.766246664

0.573758645

0.765141605

0.045785995*

0.001228669*

0.743776944

0.059300297

0.228557873

0.287926694

0.380483065

0.197043557

0.719514347

0.000339744*

0.016243392*

0.0063584

3.97E-05*

rs4271002

NAT2

0.066715616

0.189042432

0.327040513

0.208044975

0.299878957

0.000159278*

0.007107265*

3.30E-10*

3.72E-10*

2.07E-05*

0.000330686*

4.77E-06*

0.000635858*

0.417562363

0.072199748

0.357070744

1.74E-06*

0.001117691*

0.077554184

0.006521172*

0.060691113

0.476861068

0.006951173*

0.000332936*

0.008015007*

0.008719915*

rs1041983

NAT2

0.3

0.101689882

0.998513527

0.036626279*

0.132118736

0.629462005

0.990184178

0.158209247

0.24464648

0.844220999

0.183124559

0.610133391

0.007677766*

0.001717351*

1.66E-05*

0.001063258*

0.00091851*

0.000817232*

0.001042721*

0.010149174*

0.001176575*

0.155505108

0.951353573

0.383411457

0.677678934

0.579411379

rs1801280

NAT2

    

0.356035128

4.89E-14*

4.38E-14*

2.97E-14

6.83E-19

9.29E-22

4.03E-11

2.25E-11

2.47E-21

8.41E-19

6.89E-15

4.17E-22

2.27E-25

1.72E-27

3.07E-27

1.97E-30

1.73E-26

4.00E-19

1.06E-18

8.10E-20

6.31E-25

3.64E-15

rs1799929

NAT2

    

0.361199143

4.69E-11*

5.21E-11*

1.75E-08*

1.49E-15*

8.89E-19*

9.21E-08*

2.85E-06*

4.54E-20*

4.43E-18*

3.32E-14*

2.50E-19*

3.12E-25*

5.32E-26*

9.84E-26*

2.87E-30*

1.73E-26*

6.28E-18*

3.27E-16*

5.98E-18*

9.49E-22*

3.69E-14*

rs1799930

NAT2

0.972002065

0.618005239

0.751795155

0.694537677

0.012320182*

0.69375469

0.192800923

0.730809

0.372603522

0.412257221

0.783101212

0.584057039

0.881554266

0.05609109

0.000190302*

0.758530406

0.111309329

0.239563334

0.199562595

0.259685706

0.456150126

0.660367076

0.000563153*

0.020071798*

0.004077679*

1.56E-05*

rs1208

NAT2

    

0.323358729

1.18E-20*

2.46E-17*

3.46E-22*

1.32E-27*

1.45E-27*

4E-19*

2.65E-22*

6.25E-22*

4.16E-23*

6.89E-15*

5.00E-22*

6.43E-24*

1.92E-25*

8.03E-26*

1.73E-30*

4.24E-27*

9.85E-22*

1.06E-18*

9.54E-20*

1.22E-25*

2.87E-17*

rs1799931

NAT2

0.184796686

0.049117201*

0.317619594

0.00015301*

0.47411742

2.09E-08*

3.35E-05*

6.27E-11*

8.62E-12*

1.51E-11*

8.44E-07*

4.04E-09*

7.83E-06*

0.068024303

0.013692827*

2.98E-05*

3.40E-12*

1.03E-08*

1.72E-09*

1.60E-09*

3.59E-11*

0.00114834*

2.94E-07*

9.44E-07*

1.38E-06*

1.99E-05*

rs1495741

NAT2

0.050954298

3.07932E-07*

0.011465852*

5.51E-08*

0.65417351

0.507903694

0.486579857

0.257460454

0.281747884

0.696434574

0.119487491

0.019989993*

0.041821768*

0.67785097

0.070175871

0.248664031

0.043637899*

0.00729876*

0.003075161*

5.75E-05*

0.029405924*

0.055676203

0.000771028*

0.011226574*

6.30E-06*

7.45E-05*

rs2115819

ALOX5

0.002595851*

0.000362646*

0.071696502

0.008651836*

0.093741999

1.65E-37*

8.62E-25*

4.45E-37*

5.67E-41*

9.79E-33*

1.05E-31*

5.94E-40*

3.77E-16*

9.55E-11*

9.96E-07*

1.12E-14*

5.62E-24*

3.92E-19*

3.07E-18*

6.98E-20*

8.90E-21*

9.03E-16*

6.62E-23*

1.72E-20*

9.48E-16*

2.24E-14*

rs4244285

CYP2C19

0.011385106*

0.084348706

0.104324626

0.277350778

0.037979119*

8.78E-08*

2.52E-06*

6.75E-05*

3.23E-10*

0.000120419*

6.92E-06*

1.11E-07*

9.77E-11*

2.52E-07*

4.15E-14*

8.47E-10*

2.17E-09*

0.000116625*

5.20E-08*

7.41E-09*

4.51E-13*

0.357083431

0.187693423

0.922883969

0.176804078

0.86504652

rs1057910

CYP2C9

  

0.199109143

                 

0.00223127

 

5.21E-07*

0.000111245*

0.000272478*

 

rs11572103

CYP2C8

     

1.57E-16*

5.93E-10*

7.08E-15*

8.71E-19*

3.56E-09*

5.00E-12*

1.60E-14*

              

rs7909236

CYP2C8

 

0.001111119

  

0.284095031

       

6.35E-18*

1.17E-16*

1.77E-22*

1.70E-08*

1.45E-16*

3.59E-15*

1.16E-11*

3.98E-10*

2.96E-09*

1.61E-09*

3.50E-14*

3.03E-12*

1.49E-09*

3.17E-06*

rs17110453

CYP2C8

0.021440387*

0.826534465

0.858474033

0.794091714

0.043147139*

6.00E-20*

2.07E-14*

1.87E-20*

2.78E-24*

5.66E-22*

1.40E-19*

1.07E-22*

8.29E-11*

2.41E-07*

5.14E-14*

5.74E-10*

1.31E-11*

0.000358179*

6.93E-10*

0.000120667*

4.47E-11*

0.391440466

0.295282612

0.706742958

0.058493

0.76290557

rs3813867

CYP2E1

0.006552652*

3.59E-06*

0.000102114*

0.000102412*

2.78E-06

0.742811481

0.550417961

0.305302386

0.279166336

0.068293812

0.914073362

0.730517163

0.044163386*

0.009317049*

0.003053677*

0.452117467

0.47034354

0.246502725

0.104281398

0.044268805*

0.388354635

0.01515297*

0.004894979*

0.00523142*

0.007795656*

0.001761454*

rs2031920

CYP2E1

0.093771053

8.07E-05*

0.003359719*

0.004926448*

0.000300332*

5.35E-05*

0.016624442*

3.99E-05*

1.02E-05*

3.99E-05*

0.00015751*

1.66E-05*

0.253219685

0.120657802

0.09925265

0.219031776

0.272358474

0.037336905*

0.015728559*

0.004271931*

0.136905408

0.001606451*

0.000331478*

0.000363614*

0.000634024*

0.000111032*

rs6413432

CYP2E1

4.2E-19*

1.31E-16*

1.45E-15*

3.14E-16*

1.66E-19*

  

0.003915588*

0.000270607*

 

0.065854286

0.000530663*

6.57E-10*

4.59E-08*

9.02E-09*

2.97E-09*

1.63E-06*

1.26E-05*

0.015544772*

0.008287334*

9.51E-05*

8.46E-12*

1.83E-17*

7.76E-12*

9.13E-08*

2.51E-12*

rs2070676

CYP2E1

0.002553305*

0.827109248

0.672645828

0.614168132

0.448640164

3.81E-30*

1.06E-17*

1.00E-28*

5.52E-30*

2.70E-35*

3.78E-31*

7.09E-28*

0.290749722

0.022443644*

0.031891018*

0.002072634*

0.359414667

0.006774321*

0.034512086*

0.365848056

0.435369755

0.859781523

0.467538122

0.648934849

0.840697344

0.330668697

rs5219

KCNJ11

0.003978161*

0.000521662*

0.073272148

0.026139453*

0.041995705*

4.08E-16*

5.26E-07*

1.86E-24*

2.18E-25*

1.16E-23*

7.22E-22*

4.56E-26*

6.22E-05*

0.030526542*

0.289021265

0.002118976*

0.171703986

0.003250285*

0.047623834*

0.008845052*

0.005988539*

0.000383538*

0.000294121*

0.00355488*

3.67E-07*

0.023357634*

rs1801028

DRD2

 

0.002743098*

0.003159452*

             

0.032791444*

     

1.31E-13*

  

9.84E-09*

rs2306283

SLCO1B1

0.658512672

0.205950281

0.516381109

9.67E-06*

0.255712933

0.343484593

0.092030119

0.155670314

0.421337787

0.240886061

0.739594068

0.842983386

8.87E-16*

5.47E-20*

2.85E-16*

5.37E-13*

1.50E-21*

3.18E-19*

3.33E-24*

2.97E-22*

4.46E-25*

3.98E-10*

1.37E-11*

7.78E-09*

1.72E-17*

2.41E-11*

rs4516035

VDR

      

0.000250973*

     

1.88E-18*

9.22E-15*

3.10E-09*

7.20E-25*

2.88E-25*

7.28E-39*

1.17E-28*

3.93E-26*

4.93E-31*

1.74E-10*

3.70E-11*

1.81E-10*

1.72E-15*

7.16E-13*

rs762551

CYP1A2

0.1

0.300829362

0.634709813

0.103718477

0.314988006

0.124745263

0.69186992

0.000364292*

0.028368256*

1.00E-05*

0.037262669*

0.002040475*

0.209128456

0.032953675*

1.13E-05*

0.76149116

0.340413414

0.468062248

0.230946324

0.358933662

0.230526214

0.035152873*

0.000510748*

0.001980774*

0.003245356*

2.42E-05*

rs2472304

CYP1A2

0.014236939*

0.257348035

0.001901901*

1.73E-05*

0.004237979*

0.103421545

      

2.83E-16*

1.62E-07*

0.189014451

2.04E-24*

2.27E-36*

7.10E-29*

1.44E-34*

2.50E-33*

1.03E-26*

0.000626231*

0.011964466*

0.071150838

2.56E-06*

0.290829511

rs750155

SULT1A1

0.056990114

0.141351868

0.016733876*

0.351244062

0.298586001

0.550366807

0.321948571

0.002066135*

0.000560201*

0.465867078

0.097094955

0.096184189

0.005138686*

0.028868337*

3.18E-23*

0.026490062*

0.371180365

0.071724101

0.22160908

0.807754642

0.357468926

0.000453366*

0.003608286*

0.003408433*

0.049227902*

1.96E-07*

rs1800764

ACE

0.056726465

0.39143495

0.217109705

5.34E-05*

0.045931922*

2.61E-33*

8.82E-23*

1.09E-40*

1.94E-46*

1.05E-35*

2.63E-43*

7.78E-46*

4.25E-05*

0.389243603

0.47000884

1.34E-05*

6.39E-06*

4.04E-05*

0.000366475*

0.000414932*

8.38E-08*

0.016211851*

3.48E-05*

0.002243978*

0.011118101*

0.021050251*

rs4291

ACE

3.00E-30*

1.28E-35*

5.55E-31*

2.57E-26*

4.86E-35*

1.33E-28*

1.67E-29*

2.72E-30*

8.30E-26*

4.86E-35*

6.79E-26*

3.69E-35*

3.10E-29*

1.28E-34*

4.75E-42*

9.11E-29*

2.72E-30*

1.42E-24*

1.18E-31*

6.37E-28*

5.39E-31*

3.96E-29*

8.23E-28*

2.65E-35*

6.22E-30*

1.00E-28*

rs4267385

ACE

0.60706182

0.896137823

0.304531817

0.437096269

0.448897001

1.22E-24*

2.40E-15*

3.40E-26*

4.89E-32*

2.33E-33*

3.63E-30*

4.04E-30*

5.61E-06*

0.001132547*

0.876941984

3.09E-09*

2.69E-10*

1.64E-09*

1.40E-11*

1.79E-12*

7.04E-21*

0.070967336

0.001307242*

0.196898102

0.000954545*

0.008151391*

rs2108622

CYP4F2

0.688253222

0.353058471

0.579831407

0.049533921*

0.229799176

0.085598381

0.082954611

4.34E-05*

0.000977448*

0.144761136

0.129717659

0.000161974*

0.010322998*

0.071572406

0.162826967

0.004590455*

0.075664532

0.39622905

0.005888374*

2.04E-06*

2.69E-05*

1.82E-08*

1.99E-10*

2.68E-08*

1.38E-07*

1.96E-09*

rs3093105

CYP4F2

1.60E-55*

3.54E-51*

3.51E-54*

1.79E-58*

8.09E-59*

1.14E-36*

1.95E-29*

4.42E-32*

2.15E-40*

4.26E-37*

2.84E-35*

3.52E-34*

2.57E-43*

1.25E-41*

7.05E-55*

1.53E-43*

7.84E-44*

8.51E-49

1.60E-40*

6.40E-34*

1.29E-38*

4.65E-44*

1.27E-45*

1.55E-41*

1.48E-41*

1.25E-45*

rs8192726

CYP2A6

0.71094678

0.565911012

0.311301082

0.390661417

0.305375625

0.004591427*

0.245752554

0.104409227

0.002175155*

0.073757598

0.010662896*

0.10444763

0.000189151*

0.006056478*

0.00149952*

0.000247622*

0.001004263*

0.129515608

0.000373767*

0.000723061*

0.004379184*

0.496057104

0.602716704

0.243968045

0.892476883

0.243968045

rs1051298

SLC19A1

1.51E-07*

2.66E-09*

0.000482386*

3.97E-08*

2.44897E-06*

7.14E-08*

1.60E-06*

2.36E-06*

3.37E-11*

4.68E-09*

4.73E-07*

4.55E-07*

6.37E-09*

1.09E-15*

8.09E-15*

6.04E-09*

6.48E-11*

5.13E-09

5.50E-14*

4.51E-11*

2.71E-10*

1.94E-06*

7.95E-08*

2.61E-07*

3.27E-07*

2.79E-09*

rs1051296

SLC19A1

0.609205002

0.771425657

0.124768121

0.752914304

0.254101023

0.503862027

0.471517174

0.162301179

0.644086821

0.581333718

0.868173465

0.468804993

0.434021469

0.00179709

0.0062769

0.216005729

0.01134575

0.243843261

0.01625569

0.616464101

0.080496685

0.640656314

0.903856176

0.257373002

0.581655047

0.830821988

rs1131596

SLC19A1

0.022919018*

0.023544228*

0.400775632

0.005294873*

0.131694616

6.91E-11*

0.004236642*

0.000115013*

2.60E-16*

1.59E-12*

7.50E-11*

4.12E-10*

0.021820836*

2.88E-06*

8.07E-05*

0.01622849*

0.161041225

0.045935608*

9.78E-06*

0.000809244*

0.006656253*

0.01182718*

0.003770171*

0.002710073*

0.000670055*

0.002377152*

rs1065852

CYP2D6

4.20E-16

1.82E-13*

1.88E-17*

6.28E-22*

7.67E-12*

4.99E-42*

2.82E-38*

3.62E-50*

2.33E-48*

4.31E-58*

2.22E-39*

1.39E-48*

2.14E-38*

1.76E-37*

8.68E-51*

8.43E-41*

4.66E-30*

3.71E-42*

1.47E-31*

2.16E-39*

2.84E-35*

1.95E-31*

3.30E-41*

1.17E-38*

6.16E-47*

2.88E-42*

  1. EAS East Asian, AFR African, AMR American, EUR European, SAS South Asian, ACB African Caribbean in Barbados, ASW African Ancestry in Southwest US, ESN Esan in Nigeria, GWD Gambian in Western Divisions, The Gambia – Madinka, LWK Luhya in Webuye, Kenya, MSL Mende in Sierra Leone, CLM Colombian in Medellin, Colombia, MXL Mexican Ancestry in Los Angeles, California, PEL Peruvian in Lima, Peru, PUR Puerto Rican in Puerto Rico, CDX Chinese Dai in Xishuangbanna, China, YRI Yoruba in Ibadan, Nigeria, CHS Han Chinese South, JPT Japanese in Tokyo, Japan, KHV Kinh in Ho Chi Minh City, Vietnam, CEU Utah residents with Northern and Western European ancestry, FIN Finnish in Finland, GBR British in England and Scotland, IBS Iberian populations in Spain, TSI Toscani in Italy, BEB Bengali in Bangladesh, GIH Gujarati Indians in Houston, Texas, ITU Indian Telugu in the UK, PJL Punjabi in Lahore, Pakistan, STU Sri Lankan Tamil in the UK, CHB Han Chinese in Beijing, China
  2. p values were calculated from χ2 test
  3. Bold indicates*p < 0.05 indicates statistical significance