Dissection of the impact of prioritized QTL-linked and -unlinked SNP markers on the accuracy of genomic selection1

Table 8 Accuracy and percent of genetic variance explained by F_ST- and effect-preselected subsets under a simulation design with 200 QTL distributed across all 30 chromosomes

		Number of preselected SNPs (in thousands)
		1	10	20	30	40	50
Accuracy	F_ST	0.66	0.73	0.73	0.72	0.71	0.71
Accuracy	Effect	0.73	0.70	0.67	0.66	0.65	0.64
GV Explained (%)	F_ST	0.21	0.29	0.31	0.32	0.32	0.33
GV Explained (%)	Effect	0.21	0.34	0.35	0.35	0.35	0.36

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