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Table 5 Favorable alleles, their effects and typical carriers for SRUE of the 13 loci detected across 506 rice accessions in 2016 and 2017 (listed in descending order of phenotypic effect values)

From: Mining of favorable alleles for seed reserve utilization efficiency in Oryza sativa by means of association mapping

Marker-allele(bp)Phenotypic effect value (mg.mg−1)Typical carrier
20162017Mean
RM297–1800.4490.4500.450Manyedao
RM297–1750.4370.4440.441Daniaodao
RM184–2250.4320.4300.431Yandao6
RM184–2150.4130.4180.416Daniaodao
RM184–2050.3760.3830.379Manyedao
RM297–2050.3190.3370.328Youzhiyueguang
RM184–2700.2990.3160.307Youzhiyueguang
RM281–1400.1530.1470.150Yandao6
RM434–1500.1480.1420.145Yue40
RM5746–1950.1390.1320.136Yandao6
RM3589–2100.1410.1310.136Yue77
RM3471–1100.13670.12970.1332Yue40
RM5818–1450.13650.12450.1305Yue40
RM525–1000.13380.12390.1289Yue7
RM434–1550.13110.1260.1284Yue77
RM5746–1700.1300.1240.1270Manyedao
RM3589–850.1240.1150.119Yandao6
RM525–1100.1220.1130.118Jiaobaiyeqing
RM309–1600.1190.1110.115Yue77
RM3589–2200.1170.1110.114Yue40
RM3471–1700.11540.1100.113Eyingbaijingdao
RM232–1150.1160.1080.112Yue77
RM7309–1350.1060.0960.101Manyedao
  1. Locus-allele in bold font are identified by both GLM and MLM in this study and the rest by GLM only