Table 2 Comparative analysis of QTLs for seedling traits under three seeding densities
Chr | Position a | QTL | Traits/ experimentb | LD | MD | HD | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Addc | LOD | Vard | Addc | LOD | Vard | Addc | LOD | Vard | ||||
1 | bin72 | qRDW1.1 | RDW/Ex1 | −1.02 | 4.73 | 8.25 |  |  |  |  |  |  |
|  |  | qRDW1.1 | RDW/Ex2 | −0.61 | 3.79 | 6.82 | −0.48 | 3.45 | 5.08 |  |  |  |
|  |  | qRDW1.1 | RDW/Ex3 | −0.63 | 7.42 | 7.64 | −0.4 | 4.79 | 8.09 |  |  |  |
|  | bin191 | qRDW1.2 | RDW/Ex1 |  |  |  |  |  |  | −0.47 | 3.28 | 4.7 |
|  |  | qRDW1.2 | RDW/Ex2 |  |  |  |  |  |  | − 0.35 | 4.45 | 5.72 |
| Â | bin311 | qSH1.1 | SH/Ex1 | 0.68 | 6.42 | 7.12 | 1.09 | 9.45 | 7.34 | 1.10 | 8.69 | 7.35 |
| Â | Â | qSH1.1 | SH/Ex2 | 0.99 | 6.74 | 16.0 | 1.07 | 13.52 | 20.2 | 1.07 | 13.46 | 19.07 |
| Â | Â | qSH1.1 | SH/Ex3 | 0.96 | 14.70 | 13.46 | 1.13 | 17.5 | 17.91 | 1.12 | 15.53 | 17.24 |
| Â | Â | qFLSL1.1 | FLSL/Ex1 | 0.16 | 4.79 | 6.75 | 0.11 | 3.82 | 4.12 | 0.13 | 4.13 | 4.75 |
| Â | Â | qFLSL1.1 | FLSL/Ex2 | 0.18 | 5.22 | 9.74 | 0.23 | 8.53 | 11.73 | 0.25 | 8.91 | 11.99 |
| Â | Â | qFLSL1.1 | FLSL/Ex3 | 0.18 | 6.27 | 10.68 | 0.19 | 10.31 | 9.85 | 0.2 | 8.23 | 8.52 |
2 | bin411 | qFLL2.1 | FLL/Ex1 |  |  |  | −0.31 | 4.87 | 12.97 | −0.35 | 3.84 | 10.86 |
|  |  | qFLL2.1 | FLL/Ex2 |  |  |  | − 0.30 | 4.11 | 10.6 |  |  |  |
|  |  | qFLL2.1 | FLL/Ex3 |  |  |  | − 0.31 | 5.84 | 13.41 | −0.35 | 4.67 | 14 |
|  |  | qSLL2.1 | SLL/Ex1 |  |  |  | −0.55 | 3.28 | 9.55 | −0.56 | 3.98 | 9.73 |
|  |  | qSLL2.1 | SLL/Ex3 | −0.50 | 3.36 | 7.47 | −0.58 | 3.4 | 8.01 | −0.61 | 3.83 | 8.16 |
| Â | Â | qSDW2.1 | SDW/Ex2 | 1.13 | 4.58 | 6.29 | 0.90 | 3.32 | 5.83 | 0.88 | 3.42 | 7.77 |
| Â | Â | qSDW2.1 | SDW/Ex3 | 0.73 | 3.66 | 5.11 | Â | Â | Â | Â | Â | Â |
|  | bin560 | qFLL2.2 | FLL/Ex2 | −0.29 | 3.13 | 11.48 |  |  |  | −0.29 | 3.62 | 8.69 |
|  |  | qFLL2.2 | FLL/Ex3 | −0.28 | 6.54 | 11.82 |  |  |  | −0.30 | 3.25 | 10.54 |
3 | bin650 | RDW3.1 | RDW/Ex1 | −0.46 | 3.44 | 5.07 |  |  |  |  |  |  |
|  |  | RDW3.1 | RDW/Ex2 | −0.67 | 4.16 | 8.3 | −0.57 | 3.87 | 7.03 |  |  |  |
|  |  | RDW3.1 | RDW/Ex3 | −0.46 | 4.11 | 4.3 | −0.25 | 3.75 | 3.53 |  |  |  |
|  | bin758 | qSLL3.1 | SLL/Ex2 |  |  |  |  |  |  | −0.59 | 4.51 | 8.16 |
|  |  | qSLL3.1 | SLL/Ex3 |  |  |  | −0.77 | 3.3 | 11.8 | −0.85 | 3.4 | 12.28 |
4 | bin1135 | qSH4.1 | SH/Ex1 | −0.92 | 3.66 | 6.73 |  |  |  | −1.07 | 4.51 | 7.81 |
|  |  | qSH4.1 | SH/Ex3 | −0.52 | 4.14 | 4.41 | −0.56 | 4.61 | 4.83 | −0.52 | 3.52 | 4.13 |
|  |  | qSDW4.1 | SDW/Ex1 | −2.07 | 6.08 | 9.49 | −1.36 | 3.96 | 8.81 | −1.27 | 4.07 | 8.3 |
|  |  | qSDW4.1 | SDW/Ex2 | −0.97 | 5.36 | 4.61 | −0.73 | 4.39 | 3.79 | −0.58 | 5.07 | 3.49 |
|  |  | qSDW4.1 | SDW/Ex3 | −1.21 | 6.06 | 8.79 | −0.96 | 6.39 | 10.14 | −0.77 | 3.81 | 7.6 |
5 | bin1218 | qSDW5.1 | SDW/Ex2 | 0.91 | 4.28 | 4.08 | Â | Â | Â | Â | Â | Â |
| Â | Â | qSDW5.1 | SDW/Ex3 | 0.74 | 4.89 | 5.2 | Â | Â | Â | Â | Â | Â |
|  | bin1281 | qFLSL5.1 | FLSL/Ex1 |  |  |  |  |  |  | −0.20 | 5.93 | 5.82 |
|  |  | qFLSL5.1 | FLSL/Ex2 |  |  |  | −0.10 | 3.56 | 4.44 | −0.09 | 4.00 | 4.54 |
|  |  | qFLSL5.1 | FLSL/Ex3 |  |  |  |  |  |  | −0.11 | 3.92 | 4.84 |
|  | bin1325 | qSDW5.2 | SDW/Ex1 |  |  |  | −1.55 | 3.92 | 11.63 |  |  |  |
|  |  | qSDW5.2 | SDW/Ex3 | −0.99 | 3.81 | 5.91 | −0.88 | 5.75 | 8.67 |  |  |  |
6 | bin1565 | qFLSL6.1 | FLSL/Ex1 | −0.25 | 3.25 | 9.49 |  |  |  |  |  |  |
|  |  | qFLSL6.1 | FLSL/Ex3 |  |  |  | −0.13 | 4.44 | 4.46 |  |  |  |
|  |  | qFLL6.1 | FLL/ Ex1 | −0.38 | 9.18 | 17.98 | −0.38 | 9.58 | 18.67 | −0.41 | 7.57 | 15.08 |
|  |  | qFLL6.1 | FLL/Ex2 | −0.36 | 8.22 | 17.12 | −0.42 | 7.48 | 20.12 | −0.40 | 6.47 | 17.2 |
|  |  | qFLL6.1 | FLL/Ex3 | −0.36 | 7.05 | 19.83 | −0.41 | 9.18 | 23.74 | −0.42 | 10.16 | 20.32 |
|  |  | qSLL6.1 | SLL/Ex1 | −0.75 | 10.01 | 19.18 | −0.74 | 6.05 | 15.88 | −0.72 | 7.72 | 15.08 |
|  |  | qSLL6.1 | SLL/Ex2 | −0.52 | 6.96 | 11.13 | −0.59 | 7.57 | 11.76 | −0.45 | 7.13 | 5.84 |
|  |  | qSLL6.1 | SLL/Ex3 | −0.71 | 12.2 | 14.64 | −0.80 | 6.57 | 15.13 | −0.82 | 7.17 | 14.01 |
9 | bin2139 | qFLL9.1 | FLL/Ex2 | −0.28 | 5.06 | 10.73 | −0.36 | 6.65 | 14.92 | −0.34 | 3.99 | 11.87 |
|  |  | qFLL9.1 | FLL/Ex3 | −0.32 | 4.33 | 15.33 |  |  |  | −0.35 | 5.67 | 13.85 |
|  | bin2176 | qFLL9.1 | FLL/Ex1 | −0.34 | 7.41 | 14.45 | −0.31 | 6.66 | 13.03 | −0.33 | 4.91 | 10.07 |
|  |  | qFLL9.1 | FLL/Ex3 | −0.29 | 4.62 | 13.14 | −0.32 | 5.77 | 14.81 | −0.32 | 4.56 | 11.87 |
11 | bin2518 | qSH11.1 | SH/Ex1 | −1.13 | 5.74 | 10.13 | −1.13 | 4.92 | 8.39 | −0.95 | 4.37 | 6.58 |
|  |  | qSH11.1 | SH/Ex3 | −0.51 | 4.3 | 4.19 | −0.51 | 3.62 | 3.99 | −0.54 | 4.36 | 4.51 |
|  |  | qSDW11.1 | SDW/Ex1 | −2.06 | 3.79 | 9.38 | −1.53 | 5.05 | 11.24 | −1.30 | 4.4 | 8.78 |
|  |  | qSDW11.1 | SDW/Ex3 | −1.05 | 5.18 | 6.72 | −0.90 | 4.82 | 9.04 | −0.75 | 3.38 | 7.36 |
12 | bin2760 | qFLSL12.1 | FLSL/Ex1 | Â | Â | Â | 0.12 | 4.12 | 4.63 | Â | Â | Â |
| Â | Â | qFLSL12.1 | FLSL/Ex2 | 0.10 | 4.02 | 4.28 | Â | Â | Â | Â | Â | Â |
| Â | Â | qFLSL12.1 | FLSL/Ex3 | Â | Â | Â | 0.12 | 6.46 | 4.78 | Â | Â | Â |