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Table 1 Regions, SNPs, and genes reported by all types of GWAS and by DCMS

From: Genome-wide association study and scan for signatures of selection point to candidate genes for body temperature maintenance under the cold stress in Siberian cattle populations

BTA Coordinates SNP Genes P-value Q-value
GWAS SNPs
 15 2,551,329 BovineHD1500000589 GRIA4 6.97 × 10−7 0.0682
2,030,345 BovineHD1500000472a MSANTD4, GRIA4 1.26 × 10−6 0.0682
GWAS HTR
 15 1,991,615 ARS-BFGL-NGS-65843 MSANTD4, GRIA4 7.82 × 10−7 0.0161
1,997,589 BovineHD1500000469  
2,030,345 BovineHD1500000472a  
2,060,428 BovineHD1500000476  
 22 18,039,089 ARS-BFGL-NGS-52880 GRM7, LMCD1 1.29 × 10−6 0.0161
18,080,658 BovineHD2200005201  
18,127,222 BovineHD2200005211  
18,151,738 BovineHD2200005214  
18,158,982 BovineHD2200005216  
DCMS
 15 1,715,870 BovineHD1500000433 MRE11 0.000421 0.0459
1,748,346 BovineHD1500000439 ANKRD49; AASDHPPT 5.74 × 10−5 0.0122
1,776,278 BovineHD4100011767 AASDHPPT 6.42 × 10−6 0.0026
1,784,872 ARS-BFGL-NGS-116439 AASDHPPT 4.80 × 10−6 0.0022
1,798,291 BovineHD4100011768 AASDHPPT 4.22 × 10−6 0.0019
1,838,326 BovineHD1500000457 AASDHPPT; MSANTD4 7.76 × 10−6 0.003
1,889,648 BovineHD1500000462 AASDHPPT; MSANTD4 0.000111 0.0191
1,958,234 BTA-18366-no-rs AASDHPPT; MSANTD4 8.03 × 10−5 0.0153
1,991,615 ARS-BFGL-NGS-65843 MSANTD4 6.88 × 10−5 0.0137
1,997,589 BovineHD1500000469 MSANTD4 6.12 × 10−5 0.0127
2,030,345 BovineHD1500000472a MSANTD4; GRIA4 6.88 × 10−5 0.0137
2,045,135 Hapmap52632-rs29014915 MSANTD4; GRIA4 0.000114 0.0194
2,060,428 BovineHD1500000476 MSANTD4; GRIA4 0.000412 0.0455
2,082,429 BovineHD1500000480 MSANTD4; GRIA4 0.000504 0.0508
2,117,657 BovineHD1500000487 GRIA4 0.000589 0.0558
2,121,835 Hapmap50196-BTA-105647 GRIA4 0.000402 0.045
  1. aA common SNP reported by all types of analyses on BTA15