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Table 2 Genetic variation in 18 populations averaged over 9 microsatellite loci: number of alleles per population (Na), effective allele (Ne), Shannon’s information index (I), allele richness (Rs), observed heterozygosity (Ho), expected heterozygosity (He), inbreeding coefficient (FIS), mean values for the M-ratio test (M) and p-values for the genetic bottleneck detection using the Wilcoxon signed-rank test under Infinite Allele (IAM), Step-Wise Mutation (SMM) and Two-Phase Mutation (TPM) models

From: Dispersal route of the Asian house rat (Rattus tanezumi) on mainland China: insights from microsatellite and mitochondrial DNA

 

LIH

RUL

BAS

XGL

QNJ

LOY

LEZ

WZS

QUZ

SHH

CHQ

XIS

CHS

SJZ

XIY

SIC

NYC

LHS

N a

14.11

14.67

12.44

10.00

12.67

12.44

11.56

11.33

9.78

10.56

12.00

10.00

10.00

8.00

9.33

8.67

6.56

7.00

Ne

8.39

9.53

7.69

6.66

7.86

7.92

7.37

6.76

6.13

5.96

7.28

6.19

5.35

4.69

6.22

5.34

3.96

3.37

I

2.33

2.43

2.23

2.05

2.23

2.25

2.16

2.06

1.94

1.97

2.13

1.96

1.89

1.70

1.94

1.81

1.52

1.42

R s

11.68

12.35

10.66

10.00

10.64

10.98

10.74

9.37

8.73

8.611

9.76

8.502

9.202

7.715

9.33

8.06

6.21

6.14

H e

0.89

0.91

0.88

0.87

0.88

0.89

0.88

0.85

0.83

0.824

0.86

0.831

0.819

0.782

0.84

0.80

0.74

0.67

H o

0.72

0.64

0.61

0.69

0.63

0.73

0.78

0.75

0.81

0.769

0.82

0.815

0.725

0.716

0.76

0.72

0.64

0.58

F IS

0.20

0.29

0.31

0.20

0.28

0.18

0.11

0.12

0.02

0.067

0.05

0.019

0.115

0.084

0.09

0.10

0.15

0.13

M

0.38

0.33

0.32

0.34

0.37

0.40

0.35

0.37

0.44

0.44

0.42

0.41

0.38

0.38

0.39

0.41

0.38

0.36

IAM

0.001

0.001

0.001

0.003

0.001

0.001

0.005

0.001

0.001

0.001

0.001

0.002

0.082

0.082

0.010

0.019

0.002

0.285

SMM

0.918

0.248

0.752

0.545

0.674

0.715

0.787

0.918

0.787

0.986

0.82

0.545

0.999

0.981

0.85

0.545

0.82

0.99

TPM

0.285

0.005

0.064

0.125

0.082

0.014

0.326

0.18

0.024

0.064

0.125

0.064

0.715

0.248

0.326

0.285

0.285

0.898

  1. Bold characters denote a significant heterozygote deficiency (p < 0.05) after correction for multiple testing by the sequential Bonferroni procedure