| |
Breed
|
Breed abbr.
|
Nt
a
|
Nq
b
|
Regionc
|
Combined data seti
|
Ne
j
|
|---|
|
MAF
d
|
Pne
|
Hof
|
Heg
|
F
h
|
|---|
|
Chinese indigenous cattle breeds
|
Beisha
|
BSC
|
19
|
18
|
South
|
0.21
|
0.848
|
0.289
|
0.285
|
−0.015(0.015)
|
10
|
|
Tiantai
|
TTC
|
21
|
21
|
South
|
0.21
|
0.859
|
0.280
|
0.284
|
0.016(0.031)
|
59
|
|
Wenling Humped
|
WHC
|
20
|
19
|
South
|
0.22
|
0.893
|
0.300
|
0.297
|
−0.009(0.11)
|
72
|
|
Nandan
|
NDC
|
19
|
19
|
South
|
0.21
|
0.834
|
0.275
|
0.279
|
0.013(0.078)
|
67
|
|
Longlin
|
LLC
|
15
|
15
|
South
|
0.23
|
0.906
|
0.310
|
0.307
|
−0.011(0.406)
|
59
|
|
Dianzhong
|
DZC
|
30
|
30
|
South
|
0.26
|
0.924
|
0.331
|
0.339
|
0.024(0.005)
|
29
|
|
Wenshan
|
WSC
|
47
|
47
|
South
|
0.26
|
0.939
|
0.333
|
0.335
|
0.008(0.212)
|
152
|
|
Zhaotong
|
ZTC
|
43
|
42
|
South
|
0.28
|
0.965
|
0.366
|
0.365
|
−0.004(0.511)
|
85
|
|
Dabieshan
|
DBS
|
44
|
44
|
South
|
0.25
|
0.951
|
0.342
|
0.336
|
−0.019(0.001)
|
259
|
|
Nanyang
|
NYC
|
15
|
13
|
Central
|
0.27
|
0.943
|
0.356
|
0.349
|
−0.021(0.02)
|
105
|
|
Luxi
|
LXC
|
14
|
14
|
Central
|
0.28
|
0.962
|
0.361
|
0.368
|
−0.020(0.001)
|
221
|
|
Qinchuan
|
QCC
|
30
|
30
|
Central
|
0.28
|
0.972
|
0.370
|
0.364
|
−0.018(0.001)
|
235
|
|
Jinnan
|
JNC
|
55
|
55
|
Central
|
0.28
|
0.968
|
0.374
|
0.360
|
−0.038(0.001)
|
37
|
|
Tibetan
|
TIC
|
20
|
7
|
Plateau
|
0.25
|
0.904
|
0.362
|
0.335
|
–
|
–
|
|
Fuzhou
|
FZC
|
13
|
13
|
North
|
0.22
|
0.803
|
0.305
|
0.290
|
−0.051(0.05)
|
47
|
|
Mongolian
|
MGC
|
15
|
15
|
North
|
0.25
|
0.904
|
0.331
|
0.322
|
−0.026(0.001)
|
206
|
|
Yanbian Yellow
|
YYC
|
59
|
58
|
North
|
0.24
|
0.848
|
0.325
|
0.315
|
−0.032(0.001)
|
85
|
|
Improved cattle breeds
|
Chinese Caoyuan Red
|
CCR
|
26
|
26
|
North
|
0.25
|
0.849
|
0.331
|
0.316
|
−0.050(0.001)
|
63
|
|
Liaoyu White
|
LWC
|
20
|
20
|
North
|
0.26
|
0.867
|
0.334
|
0.326
|
−0.023(0.001)
|
422
|
|
Xinjiang Brown
|
XJB
|
47
|
47
|
North
|
0.22
|
0.769
|
0.313
|
0.288
|
−0.085(0.001)
|
29
|
|
Worldwide cattle breeds
|
Angus
|
AN
|
–
|
20
|
Scotland
|
0.30
|
0.971
|
0.395
|
0.386
|
−0.025(0.001)
| |
|
Hereford
|
HFD
|
–
|
20
|
Wales
|
0.29
|
0.967
|
0.384
|
0.376
|
−0.022(0.001)
|
–
|
|
GIR
|
GIR
|
–
|
20
|
India
|
0.16
|
0.737
|
0.227
|
0.225
|
−0.010(0.005)
|
–
|
|
Sahiwal
|
SAHW
|
–
|
17
|
Pakistan
|
0.16
|
0.729
|
0.225
|
0.221
|
−0.019(0.012)
|
–
|
|
Mean
| | | | | |
0.24
|
0.888
|
0.326
|
0.320
|
−0.019
|
118
|
- aTotal number of individuals sampled in each breed
- bNumber of individuals remaining after quality control, with a call rate > 0.95
- cSouth refers to south China, Central refers to central China, North refers to north China and Plateau refers to Tibet
- dMinor Allele Frequency
- eProportion of polymorphic loci within a breed
- fObserved heterozygosity
- gExpected heterozygosity
- hInbreeding coefficient (significant level)
- iPn, Ho, He, and F are calculated based on 7003 SNPs using bootstrapping method
- jRecent effective population size
