Table 2 Summary of the different low density SNP chips simulated
From: Design of low density SNP chips for genotype imputation in layer chicken
Methodology | SNP Chip | Number of SNP | |
|---|---|---|---|
RI Line | L Line | ||
Equidistance | 50Kequi | 49,636 | 50,307 |
40Kequi | 40,160 | 39,838 | |
30Kequi | 29,970 | 30,075 | |
20Kequi | 19,910 | 19,948 | |
15Kequi | 14,963 | 14,955 | |
10Kequi | 10,001 | 9966 | |
7.5Kequi | 7527 | 7496 | |
5Kequi | 4991 | 4996 | |
4Kequi | 4023 | 4000 | |
3Kequi | 2992 | 3003 | |
2Kequi | 2013 | 2003 | |
Linkage Disequilibrium | LD0.8 | 21,717 | 18,052 |
LD0.7 | 16,615 | 13,696 | |
LD0.6 | 13,214 | 10,736 | |
LD0.5 | 10,711 | 8626 | |
LD0.4 | 8521 | 6944 | |
LD0.3 | 6875 | 5578 | |
LD0.2 | 5371 | 4330 | |
LD0.1 | 3935 | 3232 | |
LD0.05 | 3205 | 2624 | |