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Table 3 Results for simulation study: Short reads. The proportions of reads correctly (TP) and incorrectly (FP) assigned to taxonomy tree at different ranks of two methods with average length of 150 bp

From: An improved statistical model for taxonomic assignment of metagenomics

  simLC simMC simHC
TAMER TADIP TAMER TADIP TAMER TADIP
Rank TP FP TP FP TP FP TP FP TP FP TP FP
Species 0.7102 0.0000 0.7102 0.0000 0.6704 0.0398 0.6704 0.0065 0.7113 0.0242 0.7289 0.0055
Genus 0.7102 0.0000 0.7102 0.0000 0.6704 0.0398 0.6704 0.0051 0.7113 0.0242 0.7289 0.0055
Family 0.7102 0.0000 0.7102 0.0000 0.7102 0.0000 0.7102 0.0000 0.7002 0.0353 0.7002 0.0342
Order 0.7102 0.0000 0.7102 0.0000 0.7102 0.0000 0.7102 0.0000 0.7002 0.0353 0.7002 0.0342
Class 0.7102 0.0000 0.7102 0.0000 0.7102 0.0000 0.7102 0.0000 0.7337 0.0018 0.7337 0.0018
Phylum 0.7102 0.0000 0.7102 0.0000 0.7102 0.0000 0.7102 0.0000 0.7337 0.0018 0.7337 0.0018
Kingdom 0.7102 0.0000 0.7102 0.0000 0.7102 0.0000 0.7102 0.0000 0.7337 0.0018 0.7337 0.0018