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Table 3 Quantitative trait loci (QTLs) for the phenotypic traits evaluated on the A05141 population during 2010 and 2011

From: Linkage analysis and QTL mapping in a tetraploid russet mapping population of potato

Trait Location (year) Chr Position (cM) LOD R 2 95% PT Model; Homologous Chromosome; and Candidate SNPs1
Maturity 95 DAP Idaho (2010–11) 5 15.0 25.2 44.3 3.4–3.9 Double-simplex; H2, H8; c2_11605
Maturity 120 DAP Idaho (2010–11) 5 15.0 34.1 54.5 3.4–3.9 Double-simplex; H2, H8; c2_11605
Maturity 95 DAP North Carolina (2010–11) 5 15.0 24.0 42.7 3.4–3.9 Double-simplex; H2, H8; c2_11605
Maturity 120 DAP North Carolina (2010–11) 5 15.0 21.2 38.5 3.2–3.7 Double-simplex; H2, H8; c2_11605
Growth habit Idaho (2010–11) 5 16.0 17.9 32.7 3.4–3.9 Double-simplex; H2, H8; c2_11605
Growth habit North Carolina (2010–11) 5 15.0 8.0 14.8 3.2–3.7 Double-simplex; H2, H8; c2_11605
Tuber shape Idaho (2010–11) 5 9.0 4.3 7.5 3.2–3.6 Double-simplex; H2, H8; c2_11605
Early Blight Idaho (2011) 5 15.0 20.6 41.3 3.3–3.6 Double-simplex; H2, H8; c2_11605
Verticillium wilt Idaho (2011) 5 15.0 24.3 46.5 3.3–3.8 Double-simplex; H2, H8; c2_11605
Citric acid North Carolina (2010) 5 9.0 5.3 10.7 3.2–3.7 Double-simplex; H2, H8; c2_11605
Glucose Idaho (2011) 5 21.0 3.9 6.2 3.1–3.5 Double-simplex; H2, H5
Fry bud end Idaho (2010–11) 5 14.0 4.7 8.3 3.1–3.5 Duplex, H5, H7; c2_50301
Glucose Idaho (2010–11) 4 66.0 6.0 11.3 3.7–4.1 Double-simplex; H2, H5; c2_12976
Fry bud end Idaho (2010–11) 4 66.0 5.2 9.4 3.6–4.1 Double-simplex; H2, H5; c2_12976
Fry stem end Idaho (2010–11) 4 66.0 4.5 7.2 3.6–4.0 Double-simplex; H2, H5; c2_12976
Fry bud end Idaho (2010–11) 6 43.0 5.4 10.8 3.6–4.0 Double-simplex; H2, H5; c2_56145
Fry stem end Idaho (2010–11) 6 43.0 7.6 16.1 3.5–4.0 Double-simplex; H2, H5; c2_56145
Glucose Idaho (2010–11) 6 53.0 5.7 11.3 3.3–3.8 Double-simplex; H2, H5; c2_56145
Glucose Idaho (2010–11) 10 55.0 4.5 7.5 3.5–4.1 Simplex; H5; c2_48118
Fry bud end Idaho (2010–11) 10 55.0 4.3 6.8 3.4–3.9 Simplex; H5; c2_48118
Fry bud end Idaho (2010–11) 11 39.0 5.3 10.5 3.1–3.4 Double-simplex; H4, H5
  1. 1Candidate SNPs correspond to the Infinium 8303 Potato Array designations (solcap_snp)
  2. QTL position is indicated by chromosome (Chr) and map position in centimorgan (cM). LOD logarithm of the odds; R2, explained variance; PT, 95% permutation threshold