Table 1 LEA proteins distribution in upland cotton compared with other plants
LEA genes grouping in this study | Pfam | Hundertmark et al. (2008) | Bies-Etheve et al. (2008) | Arabidopsis | G. hirsutum (AD) | G. arboreum (A) | G. raimondii (D) | Pinus tabuliformis | TOTALS |
|---|---|---|---|---|---|---|---|---|---|
LEA 1 | PF03760 | LEA1 | LEA4 | 7 | 9 | 4 | 4 | 3 | 27 |
LEA 2 | PF03168 | LEA2 | LEA7 | 3 | 157 | 85 | 89 | 1 | 335 |
LEA 3 | PF03242 | LEA3 | LEA6 | 4 | 16 | 6 | 7 | 6 | 39 |
LEA 4 | PF02987 | LEA4 | LEA3 | 12 | 13 | 8 | 7 | 16 | 56 |
LEA 5 | PF00477 | LEA5 | LEA1 | 6 | 9 | 7 | 6 | 3 | 31 |
LEA 6 | PF10714 | PvLEA18 | LEA8 | 3 | 4 | 2 | 4 | 0 | 13 |
SMP | PF04927 | SMP | LEA5 | 6 | 10 | 16 | 17 | 0 | 49 |
DEHYDRIN | PF00257 | Dehydrin | LEA2 | 10 | 24 | 8 | 8 | 1 | 51 |
TOTALS | 51 | 242 | 136 | 142 | 30 | 601 | |||