Table 2 Results of testing IntroMap across various NGS read coverage for the 20160409AC-1234 simulated genome (frac=0.05,t=0.90)
From: IntroMap: a signal analysis based method for the detection of genomic introgressions
NGS read-set | Coverage depth (x) | Coverage breadth (%) | TPR | FPR | Mean loci accuracy | Run time | Peak memory (GB) | Aligned read pairs |
|---|---|---|---|---|---|---|---|---|
L001 | 14.95 | 94.69 | 0.70 | 0.00 | 0.25 | 35m10s | 55 | 25.65 M |
L002 | 11.97 | 94.66 | 0.60 | 0.00 | 0.21 | 34m21s | 50 | 20.53 M |
L003 | 8.98 | 94.59 | 0.60 | 0.00 | 0.21 | 22m07s | 32 | 15.40 M |
L004 | 5.99 | 94.29 | 0.50 | 0.00 | 0.21 | 15m56s | 30 | 10.27 M |
L005 | 2.99 | 90.03 | 0.30 | 0.00 | 0.13 | 9m43s | 30 | 5.14 M |