Genetic variation in populations of the earthworm, Lumbricus rubellus, across contaminated mine sites

BMC Genomic Data

Table 2 Lineage-specific annotation results for scaffolds containing SNPs most significantly differentiating populations of L. rubellus inhabiting contaminated former mine sites and nearby control sites

Marker	Scaffold name	Sequence length (bp)	Sequence description	Minimum e-value	P-value	Site	Lineage
1	scaffold596	38,917	PREDICTED: uncharacterized protein LOC105439557	1.00E-114	2.44E-07	CWM	A
2	scaffold90812	2919	---NA---	–	1.05E-06	CWM	B
3	scaffold51697	8321	glutamate receptor 1- partial	4.90E-01	1.55E-06	CWM	A
4	scaffold114081	3538	ubiquitin thioesterase partial	1.50E-09	1.74E-06	CWM	A
5	scaffold34161	7815	techylectin- partial	2.00E-26	2.30E-06	CWM	A
6	scaffold7091	27,562	organic cation transporter protein isoform x1	1.60E-06	2.98E-06	CWM	A
7	scaffold65438	4451	potassium voltage-gated channel subfamily a member 3-like	0.00E + 00	6.66E-06	DGC	B
8	scaffold83338	3307	polypeptide n-acetylgalactosaminyltransferase-like partial	8.40E-09	7.42E-06	DGC	B
9	scaffold53218	5489	membrane metallo-endopeptidase-like partial	4.60E-11	7.94E-06	DGC	B
10	scaffold111638	2040	PREDICTED: uncharacterized protein LOC106143484	2.00E-39	7.94E-06	DGC	B

SNPs were included when P < 1 × 10⁻⁵, as calculated using Fisher’s exact test by the Populations module of Stacks. The e-value refers to the expected number of random hits for an alignment by blastx, with lower values being more significant matches. A complete table can be found in Additional file 3

ISSN: 2730-6844