From: Genomic prediction in early selection stages using multi-year data in a hybrid rye breeding program
Label | Short notation | TS used | No. stages | Use of Kinship | Description |
---|---|---|---|---|---|
 |  |  |  | to model GY |  |
A1 | Year-wise | controlTS1, controlTS2, | 2 + GP | no | Year-wise model and GP with year as fixed effect |
 | without kinship | controlTS3 |  |  |  |
A1K | Year-wise | controlTS2, controlTS3 | 2 + GP | yes | Year-wise model and GP with year as fixed effect |
 | with kinship |  |  |  | and GY modeled using kinship |
A2 | 2-stg-Kin | TS1, TS2, TS3 | 2 | yes | Across years model with GP included in the 2nd |
 |  |  |  |  | stage and GY modeled using kinship |
A3 | 2-stg-Kin-het | TS1, TS2, TS3 | 2 | yes | Across years model with GP included in the 2nd |
 |  |  |  |  | stage and GY modeled using kinship. Allows heterogeneous |
 |  |  |  |  | rogeneous variance among years in the GY interaction effect |
A4 | 3-stg-NoKin | TS1, TS2, TS3 | 3 | no | Across years model for the TS using no kinship to model GY. |
 |  |  |  |  | Third stage is GP |
A5 | 3-stg-Kin | TS1, TS2, TS3 | 3 | yes | Across years model for the TS. Uses kinship in the 2nd stage |
 |  |  |  |  | of the TS to model GY. Third stage is GP |