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Table 1 Significantly changed pathways in each of the three primary lymphoid tissues in different contrasts

From: Deciphering alternative splicing and nonsense-mediated decay modulate expression in primary lymphoid tissues of birds infected with avian pathogenic E. coli (APEC)

Contrast Pathway Adjusted p value
Bone Marrow Thymus Bursa
Susceptible vs. Non-challenged birds at 5 dpi ↑ gga 04145: Phagosome 1.34E-03 NA NA
↑ gga 04142: Lysosome 1.31E-02 NA NA
↓ gga 04110: Cell cycle NA 6.98E-05 NA
↓ gga 04115: p53 signaling pathway NA 2.37E-02 NA
↑ gga 04514: Cell adhesion molecules (CAMs) NA NA 5.48E-03
Susceptible vs. Resistant birds at 5 dpi ↑ gga 04145: Phagosome 2.29E-02 3.12E-02 NA
↑ gga 04142: Lysosome 7.86E-03 1.18E-03 NA
↑ gga 04060: Cytokine-cytokine receptor interaction NA 2.58E-02 NA
↑ gga 04210: Apoptosis NA 2.14E-02 NA
↓ gga 04110: Cell cycle NA 7.30E-03 NA
↑ gga 04514: Cell adhesion molecules (CAMs) NA 3.26E-03 NA
  1. NA none available, ↑ the significantly changed pathway was induced, ↓ the significantly changed pathway was suppressed