|
Candidate genes
|
Chr.
|
Window (Mbp)
|
XP-CLR
|
Max XP-EHH
|
XP-EHH P-value
|
Tajima’s D
|
Weighted FST
|
Species, trait and reference
|
|---|
|
PIK3CB
|
1
|
131.50–131.55
|
121.48
|
2.21
|
1.69.E-03
|
−1.06
|
0.27
|
RFI [79]a
|
|
MRAS
|
1
|
131.73–131.78
|
112.25
|
-
|
-
|
−1.87
|
0.16
|
FCE [79]a
|
|
PLA2G2A
|
2
|
133.28–133.33
|
117.48
|
-
|
-
|
0.70
|
0.27
|
IMF [58]b, [59]c
|
|
CAPZB
|
2
|
133.78–133.83
|
142.50
|
-
|
-
|
−0.47
|
0.22
|
Tenderness [32]c
|
|
COL9A2
|
3
|
106.38–106.43
|
107.14
|
1.93
|
5.95.E-03
|
−1.30
|
0.15
|
Tenderness [46]b
|
|
LIMA
|
5
|
29.78–29.83
|
117.18
|
-
|
-
|
−0.33
|
0.39
|
Tenderness [45]b
|
|
SLC48A1
|
5
|
32.63–32.68
|
101.45
|
1.80
|
6.96.E-03
|
−0.35
|
0.26
|
Meat color [68]d
|
|
MB
|
5
|
74.18–74.23
|
129.86
|
1.96
|
5.00.E-03
|
−0.98
|
0.20
|
Meat color [41, 67]d
|
|
APOL6
|
5
|
74.20–74.25
|
-
|
2.00
|
5.00.E-03
|
−0.91
|
0.13
|
IMF [65]d
|
|
ATP8A1
|
6
|
62.90–62.95
|
264.27
|
2.02
|
4.00.E-03
|
−1.39
|
0.36
|
FCE [76]c
|
|
PDGFRA
|
6
|
71.35–71.40
|
408.60
|
2.61
|
3.00.E-04
|
−2.29
|
0.45
|
Tenderness [53]b
|
|
MAP3K5
|
9
|
75.55–75.60
|
147.37
|
2.09
|
3.00.E-03
|
−0.23
|
0.15
|
RFI [75]b
|
|
PARK2
|
9
|
99.13–99.18
|
132.40
|
2.34
|
2.36.E-03
|
−0.27
|
0.30
|
IMF [62]a
|
|
PKM2
|
10
|
18.95–19.00
|
-
|
1.97
|
2.00.E-03
|
−1.18
|
0.25
|
Tenderness [32]d, [52]a; IMF [64]b; Drip loss [70, 71]b
|
|
ZNF410
|
10
|
85.68–85.73
|
165.86
|
2.18
|
1.94.E-03
|
−0.67
|
0.28
|
Tenderness [32]c, [35]b
|
|
AHSA1
|
10
|
89.70–89.75
|
-
|
2.23
|
2.00.E-03
|
−1.47
|
0.31
|
IMF [66]c
|
|
MAP4K4
|
11
|
6.65–6.70
|
-
|
1.85
|
9.00.E-03
|
0.72
|
0.08
|
Drip loss [70, 71]b
|
|
NFATC2
|
13
|
80.00–80.05
|
-
|
2.01
|
4.24.E-03
|
2.53
|
0.25
|
Tenderness [55]d
|
|
WWP1
|
14
|
78.63–78.68
|
133.90
|
-
|
-
|
1.03
|
0.18
|
Tenderness [50]d
|
|
OR2D2, OR10A4, OR2D3
|
15
|
46.40–46.45
|
-
|
2.07
|
3.45.E-03
|
2.61
|
0.18
|
Feed intake [78]d; [77]b
|
|
MAP2K3
|
19
|
35.85–35.90
|
-
|
1.93
|
4.00.E-03
|
−0.20
|
0.16
|
IMF [49]b
|
|
PLCD3
|
19
|
45.40–45.45
|
-
|
1.89
|
5.00.E-03
|
−0.18
|
0.03
|
IMF [56]d
|
|
TIMP2
|
19
|
54.10–54.15
|
-
|
1.88
|
7.46.E-03
|
−0.73
|
0.18
|
RFI [73]c
|
|
PLCD1
|
22
|
11.45–11.50
|
195.30
|
2.12
|
3.00.E-03
|
−1.43
|
0.14
|
IMF [56]d
|
|
ROCK1
|
24
|
35.48–35.53
|
130.40
|
2.22
|
1.61.E-03
|
0.93
|
0.29
|
Tenderness [48]a; IMF [61]b
|
|
PRKG1
|
26
|
7.43–7.48
|
166.61
|
-
|
-
|
−1.27
|
0.13
|
Tenderness [54]d; IMF [36]b; RFI [72]c
|
- Note: Chr. Chromosome, Window: start and end positions of the gene region; RFI residual feed intake, FCE feed conversion efficiency, IMF intramuscular fat; Superscripts in the Species, Trait and Reference column indicate the species that the trait has been previously reported for as achicken, bpork, cbeef, dgeneral (not for a specific species)
