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Table 3 SNPs PIP0.99 associated with dorsal colour morphs obtained through Multi–SNP association tests using Bayesian regression approach

From: Assessing genotype-phenotype associations in three dorsal colour morphs in the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) using genomic and transcriptomic resources

MARTRI
SNP_ID PIP β Minor Allele Major Allele MAF TRI MAF MAR MAF TYP
 41239:75 0.05228 0.73688 G T 0.3333 0.0000 0.1000
 50515:83 0.05294 0.70499 A T 0.2857 0.0000 0.0000
55187:46 0.05326 0.67185 A G 0.2778 0.0000 0.5000
55187:79 0.07371 1.18427 G A 0.3887 0.0000 0.5000
 69098:53 0.0545 4.0856 C A 0.1818 0.0000 0.2778
75897:7 0.13035 0.89186 C T 0.5833 0.0000 0.0000
 94147:30 0.05298 0.7147 G A 0.6818 0.3182 0.3889
 106126:52 0.05356 1.10651 C T 0.2500 0.0000 0.0000
 126355:29 0.08618 3.89385 T C 0.5500 0.0455 0.1667
 3950:1 0.05946 −0.86693 G A 0.1667 0.7727 0.3750
22795:88 0.06048 −0.98089 G A 0.0500 0.5000 0.4286
 25027:11 0.05188 −1.28702 T A 0.0000 0.1667 0.1667
 3950:1 0.05946 −0.86693 G A 0.1667 0.7727 0.3750
 22795:88 0.06048 −0.98089 G A 0.0500 0.5000 0.4286
 25027:11 0.05188 −1.28702 T A 0.0000 0.1667 0.1667
43069:10 0.07528 −2.3343 C G 0.0000 0.4167 0.5714
 43069:34 0.06763 −1.50904 A T 0.0000 0.4167 0.5000
 54226:66 0.05956 −1.00561 A T 0.0000 0.3500 0.0000
 63439:8 0.05754 −0.73234 A C 0.1364 0.5500 0.3500
 83460:19 0.05406 −0.72601 C T 0.0000 0.3889 0.0000
87932:85 0.05747 −0.72742 C T 0.0000 0.5000 0.5556
 103246:16 0.05827 −1.14876 T C 0.0000 0.3571 0.1000
TRITYP
SNP_ID PIP β Minor Allele Major Allele MAF TRI MAF MAR MAF TYP
 6535:35 0.0534 0.92979 G A 0.1667 0.5556 0.6250
22795:88 0.0519 0.71932 G A 0.0500 0.5000 0.4286
 24031:66 0.05241 1.12531 C T 0.0000 0.1111 0.2000
 24031:81 0.05745 0.84617 T G 0.0000 0.0556 0.2000
 41742:86 0.05111 0.74532 C G 0.0000 0.4167 0.5714
43069:10 0.09056 1.35007 A T 0.0000 0.4167 0.5000
 43069:34 0.09699 1.79618 A T 0.0000 0.4167 0.5000
 45009:87 0.05206 0.64932 T G 0.1500 0.1818 0.6500
 59359:24 0.05896 1.0716 G A 0.1000 0.2000 0.6000
87932:85 0.05394 0.98257 C T 0.0000 0.5000 0.5556
 103746:74 0.07094 1.25641 T A 0.0909 0.4000 0.5833
 123202:88 0.05166 0.6811 T A 0.0909 0.1000 0.4286
 27816:86 0.05363 −0.79657 G A 0.6364 0.4375 0.1875
 37095:26 0.05663 −0.84607 T G 0.4444 0.1000 0.0556
 43143:5 0.05286 −0.67184 T C 0.7222 0.4000 0.2500
 56752:20 0.05638 −0.73623 G A 0.6875 0.4444 0.1250
75897:7 0.07396 −1.31379 C T 0.5833 0.0000 0.0000
 118051:49 0.05605 −0.82887 G C 0.1000 0.1500 0.0000
 118835:54 0.05156 −0.68197 C A 0.0455 0.3636 0.0000
MARTYP
SNP_ID PIP β Minor Allele Major Allele MAF TRI MAF MAR MAF TYP
 7095:50 0.04707 0.65574 C T 0.0556 0.0417 0.2000
 11381:9 0.04714 0.61586 A G 0.1667 0.0000 0.2857
 20734:39 0.0621 0.06957 T C 0.4286 0.3000 0.7778
 23155:83 0.04559 0.58512 T G 0.1111 0.1000 0.5000
 24668:63 0.05327 0.84822 C G 0.3333 0.3182 0.7500
 27059:59 0.04681 1.00875 T C 0.2222 0.2083 0.5000
 35205:6 0.06037 0.89098 G C 0.0625 0.2273 0.0000
 54049:70 0.0568 0.76067 G A 0.5000 0.2727 0.7500
55187:46 0.11972 1.88694 A G 0.2778 0.0000 0.5000
55187:79 0.13314 0.66567 G T 0.3889 0.0000 0.5000
 64258:61 0.05429 0.96162 G A 0.1500 0.0455 0.4286
 102702:13 0.04718 0.03275 T A 0.0000 0.0000 0.2143
 104623:88 0.04711 0.70632 G A 0.1875 0.0000 0.1429
 108304:78 0.04626 0.48985 C A 0.3571 0.2971 0.6250
 16628:65 0.06209 −0.89022 C A 0.0000 0.5000 0.0000
 51349:15 0.04563 −0.59847 T C 0.1667 0.2500 0.0000
 64204:16 0.04703 −0.60862 T G 0.1250 0.5000 0.1111
 64204:46 0.04626 −0.59146 G T 0.2778 0.5000 0.1111
 66105:38 0.04521 −0.53359 A C 0.3000 0.2143 0.0500
  1. Posterior inclusion probability associated to SNP (PIP); Effect size of an individual SNP on the phenotype (β) and minor allele frequency for each locus and morph (maf). SNPs common to comparisons are underlined