Skip to main content

Table 2 Up-regulated and down-regulated genes in centromere-46.75 Mb (R2 and R3 regions) of chromosome 12 in the epididymal fat in the A/J-12SM consomic strain

From: Genetic dissection of the fatty liver QTL Fl1sa by using congenic mice and identification of candidate genes in the liver and epididymal fat

Symbol Gene name Position (Mbp) Region Fold changea Gene bank ID
Pfn4 profilin family, member 4 4.76 R2 0.525 NM_028376
Fkbp1b FK506 binding protein 1b 4.83 R2 0.557 NM_016863
Apob apolipoprotein B 7.97 R2 7.460 NM_009693
Nt5c1b 5’-nucleotidase, cytosolic IB 10.36 R2 0.296 NM_027588
Ntsr2 neurotensin receptor 2 16.65 R2 1.896 NM_008747
Zfp125 zinc finger protein 125 20.89 R2 0.104 AJ005350
Rsad2 radical S-adenosyl methionine domain containing 2 26.44 R2 0.580 NM_021384
Cmpk2 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial 26.46 R2 0.463 NM_020557
Allc allantoicase 28.55 R2 0.366 NM_053156
Sh3yl1 Sh3 domain YSC-like 1 30.91 R3 0.565 NM_013709
Slc26a3 solute carrier family 26, member 3 31.39 R3 0.361 ENSMUST
00000001254
Gdap10 ganglioside-induced differentiation-associated-protein 10 32.82 R3 1.928 BC052902
Cdhr3 cadherin-related family member 3 33.03 R3 0.557 NM_001024478
Efcab10 EF-hand calcium binding domain 10 33.39 R3 0.578 NM_029152
Mir680-3 microRNA 680-3 35.19 R3 2.545 NR_030449
Dgkb diacylglycerol kinase, beta 37.88 R3 1.879 NM_178681
Nrcam neuronal cell adhesion molecule 44.32 R3 0.529 NM_176930
Stxbp6 syntaxin binding protein 6 (amisyn) 44.85 R3 3.307 NM_144552
Nova1 neuro-oncological ventral antigen 1 46.69 R3 1.908 NM_021361
  1. Up-regulated (log20.75, >1.68-fold) and down-regulated (log2-0.75, <0.60-fold) genes were identified from a DNA microarray analysis between A/J and A/J-12SM mice
  2. aFold change was calculated by the gene expression level in A/J-12SM relative to that in A/J mice