Table 3 Potential novel miRNAs with miRNA* found in S. italica
miRNA | Mature Sequence | Arm | Length (nt) | miRNA* sequence | percursor location | MFE |
|---|---|---|---|---|---|---|
sit_novel_miR10 | GTATGGAAGAACTGCTGCGCCA | 3p | 22 | ATGGTGTACCGGTTGTTATGC | scaffold_7:35210708..35210784:- | -30.2 |
sit_novel_miR15 | CACTATAGGAGCTGGCCAGGT | 5p | 21 | AGGCTAGGCTTGCGACTGGAG | scaffold_14:67096..67179:- | -31.4 |
sit_novel_miR30 | TTAGGCTCGGGGACTATGGTG | 5p | 21 | CCGTAGCCCCTGCTCCTGATG | scaffold_5:4967704..4967886:- | -101.4 |
sit_novel_miR41 | GTGCTCCCTCCCGTTGTCACC | 3p | 21 | TGACAACGAGAGAGAGCA | scaffold_8:21627028..21627140:+ | -71.2 |
sit_novel_miR42 | TGAGCCGAACCAATATCACTC | 3p | 21 | CGTGGTGTTGTTTCGGCTCATG | scaffold_1:34236041..34236153:+ | -53.1 |
sit_novel_miR45 | GGATATTGGTGCGGTTCAATC | 5p | 21 | TTGAGCCGTGCCAATATCACG | scaffold_7:30396911..30397013:- | -50.3 |
sit_novel_miR48 | TGGTAGGCATTCTGGTTAAGT | 3p | 21 | TTAGCCAAGAATGACTTGCCTATC | scaffold_3:6158117..6158229:+ | -49.2 |
sit_novel_miR56 | TTGACAGAAGAGAGCGAGCAC | 5p | 21 | GCTCGCTCCTCTTTCTGTCAGC | scaffold_4:31435223..31435323:+ | -66.6 |