Table 1 Segregation test of 34 variants in family 242
From: Exome sequencing in one family with gastric- and rectal cancer
Chrom:Positiona | Ref | Alt | Gene | dbSNP | 1000Gb | Co-441 | Co-634 | Co-666 | Co-667 | Co-771 | Co-652 | Co-692 | Co-657 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1:235577776 | C | T | TBCE | rs62620041 | 0.0023 | C/T | C/C | C/T | C/T | C/T | C/C | C/C | C/C |
2:29295186 | C | T | C2orf71 | rs75276619 | 0.01 | C/T | C/T | C/T | C/C | C/C | C/C | C/T | C/C |
2:155555406 | A | G | KCNJ3 | rs16838016 | 0.0032 | A/G | A/A | A/G | A/G | A/G | A/G | A/A | A/G |
2:169870004 | G | A | ABCB11 | rs11568361 | Â | A/G | G/G | A/G | A/G | A/G | A/G | G/G | G/G |
3:137786409 | A | C | DZIP1L | Â | Â | A/C | A/C | A/C | A/C | A/C | A/C | A/A | A/C |
3:142542415 | C | T | PCOLCE2 | rs147612568 | 0.0014 | C/T | C/T | C/T | C/T | C/T | C/T | C/C | C/T |
3:151171329 | G | T | IGSF10 | rs143721392 | Â | G/T | G/T | G/T | G/T | G/T | G/T | G/T | G/T |
3:151598890 | T | C | SUCNR1 | Â | Â | C/T | C/T | C/T | C/T | C/T | C/T | C/T | C/T |
4:13590380 | A | G | BOD1L1 | rs140964488 | 0.0009 | A/G | A/G | A/G | A/A | A/G | A/A | A/G | A/A |
4:22440018 | C | G | GPR125 | rs144997202 | 0.0005 | C/G | C/G | C/G | C/C | C/G | C/G | C/G | C/C |
4:25849449 | G | A | SEL1L3 | Â | Â | A/G | A/G | A/G | G/G | A/G | A/G | A/G | G/G |
7:141765172 | A | T | MGAM | Â | Â | A/T | A/T | A/T | A/A | A/T | A/A | A/A | A/A |
9:107331452 | G | A | OR13C8 | Â | Â | A/G | A/G | A/G | A/G | A/G | G/G | G/G | G/G |
9:111947836 | GGA | - | EPB41L4B | Â | Â | GGA/- | GGA/- | GGA/- | GGA/- | GGA/- | GGA/GGA | GGA/GGA | GGA/GGA |
9:139369066 | G | A | SEC16A | rs148167113 | 0.01 | A/G | A/G | A/G | A/G | A/G | A/G | A/G | A/G |
9:139401233 | C | T | NOTCH1 | rs61751543 | 0.01 | C/T | C/T | C/T | C/T | C/T | C/T | C/T | C/T |
10:5931230 | C | T | ANKRD16 | rs3750659 | 0.06 | C/T | C/T | C/T | C/C | C/T | C/C | C/C | C/C |
11:130784886 | T | C | SNX19 | rs117260465 | 0.01 | C/T | C/T | C/T | T/T | C/T | T/T | C/T | T/T |
12:10954583 | A | T | TAS2R7 | rs139604652 | 0.0032 | A/T | A/T | A/T | A/T | A/T | A/A | A/T | A/A |
12:109617728 | A | G | ACACB | rs16940029 | 0.08 | A/G | A/A | A/G | A/A | A/G | A/A | A/G | A/G |
16:14029033 | G | A | ERCC4 | rs1800067 | 0.03 | A/G | G/G | A/G | A/G | A/G | G/G | G/G | A/G |
16:15818842 | A | G | MYH11 | rs16967510 | 0.02 | A/G | A/A | A/G | A/A | A/G | A/G | A/A | A/G |
16:22826046 | T | G | HS3ST2 | rs189013090 | 0.01 | G/T | T/T | G/T | G/T | G/T | T/T | T/T | G/T |
17:62028920 | C | G | SCN4A | rs41280102 | 0.01 | C/G | C/C | C/G | C/C | C/G | G/G | C/G | C/G |
18:67721492 | G | C | RTTN | rs34717557 | 0.01 | C/G | G/G | C/G | G/G | C/G | C/G | G/G | C/G |
18:67836115 | G | T | RTTN | rs34353615 | 0.01 | G/T | G/G | G/T | G/G | G/T | G/T | G/G | G/T |
18:72343156 | A | G | ZNF407 | rs75994611 | 0.01 | A/G | A/A | A/G | A/A | A/G | A/G | A/A | A/G |
19:3834863 | C | T | ZFR2 | rs61747120 | 0.04 | C/T | C/C | C/T | C/C | C/T | C/T | C/T | C/T |
22:30733787 | C | T | SF3A1 | Â | Â | C/T | C/T | C/T | C/T | C/T | C/T | C/T | C/C |
22:30951208 | C | T | GAL3ST1 | rs139452633 | 0.0005 | C/T | C/T | C/T | C/T | C/T | C/T | C/T | C/C |
22:38111897 | C | T | TRIOBP | rs143157673 | 0.0018 | C/T | C/T | C/T | C/T | C/T | C/T | C/T | C/C |
22:46653273 | C | T | PKDREJ | rs147180698 | Â | C/T | C/C | C/T | C/C | C/T | C/T | C/T | C/C |
X:107844666 | G | T | COL4A5 | rs34077552 | 0.01 | G/T | G/G | G/T | G/T | T/T | G/T | G/T | G/T |
X:119293216 | - | G | RHOXF2 |  |  | -/G | −/− | -/G | -/G | -/G | -/G | -/G | -/G |