Skip to main content

Table 1 Major candidate genes for meat quality detected from positive selection scans (XP-EHH and XP-CLR)

From: Exploring evidence of positive selection reveals genetic basis of meat quality traits in Berkshire pigs through whole genome sequencing

Candidate genes Chromosome Window (Mbp) XP-EHH (B-L)a XP-EHH (B-Y)b XP-CLR (B-L)c XP-CLR (B-Y)d
TG 4 8.075–8.1 6.62E-03 9.01E-03 316.91 512.22
FABP1 3 60.625–60.65 4.37E-03 8.11E-03 343.91 463.03
ERN1 12 14.95–14.975 4.71E-03 2.46E-03 334.99 358.46
ICAM2 12 14.95–14.975 4.71E-03 2.46E-03 334.99 358.46
JPH3 6 1.8–1.825 9.86E-03 7.81E-03 550.37 534.39
TGFBR3 4 136.675–136.7 4.64E-03 4.10E-03 167.01 230.76
GLP2R 12 57.45–57.475 8.35E-03 4.71E-04 177.41 277.77
PPP2R5C 7 129.925–129.95 6.45E-03 7.40E-03 179.71 184.98
AKIRIN2 1 62.775–62.8 6.07E-04 6.08E-03 138.15 120.63
  1. aEmpirical P-value resulting from XP-EHH analysis between Berkshire and Landrace
  2. bEmpirical P-value resulting from XP-EHH analysis between Berkshire and Yorkshire
  3. cXP-CLR score of genomic region between Berkshire and Landrace
  4. dXP-CLR score of genomic region between Berkshire and Yorkshire
\