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Table 4 Linear mixed models describing the difference in gene expression in milk somatic cells before and after experimental challenge

From: Differential expression of CXCR1 and commonly used reference genes in bovine milk somatic cells following experimental intramammary challenge

Gene

All quarters 1 h

Neighboring quarters

Infected quarters

 

before inoculation a

12 h after inoculation

12 h after inoculation

 

(n = 15 b )

(n = 8)

(n = 7 b )

 

β 0 c

SE d

β c

SE d

P -value

β c

SE d

P -value

ACTB

0.27

0.07

-0.06

0.08

0.46

0.10

0.09

0.27

B2M

0.04

0.06

0.15

0.07

<0.05

0.41

0.07

<0.01

CXCR1

-1.30

0.15

0.94

0.26

<0.01

1.71

0.27

<0.01

H2A

-0.04

0.06

0.17

0.07

<0.05

-0.21

0.07

<0.01

HPRT1

-0.08

0.05

-0.03

0.07

0.66

-0.31

0.07

<0.01

RPS15A

-0.10

0.10

-0.07

0.12

0.59

-0.06

0.13

0.62

SDHA

-0.13

0.05

0.04

0.08

0.67

-0.22

0.09

<0.05

UBC

-0.17

0.05

0.13

0.08

0.10

-0.03

0.08

0.67

YWHAZ

-0.13

0.08

0.05

0.09

0.61

0.28

0.09

<0.01

  1. aTwo quarters of 8 dairy heifers were inoculated with PBS or Staphylococcus chromogenes.
  2. bTwo samples showed insufficient cDNA integrity and were therefore removed from the dataset.
  3. cRegression coefficient.
  4. dStandard error.
  5. Heifer and quarter were added as random effect to correct for clustering of quarters within cows and two observations per quarter, respectively.