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Table 2 Results of permutation analysis

From: Identification of single nucleotide polymorphisms in Toll-like receptor candidate genes associated with tuberculosis infection in water buffalo (Bubalus bubalis)

Chromosome

SNP

Empirical P -value

17

42-C > T

0.9000

17

53-C > T

0.1967

17

108-C > T

0.1714

17

153-G > A

0.2195

17

156-C > T

0.9452

17

374-T > C

0.1229

17

381-A > G

0.9788

17

482/483-GC > CT

0.8222

17

519-G > C

0.5175

17

1034-A > G

0.2191

17

1375-T > C

0.1302

17

1407-C > T

0.8738

17

1650-G > A

0.0138*

17

1678-A > G

0.1505

17

1707-C > T

0.2203

17

1731-C > T

0.9286

17

1740-C > T

0.8985

17

2064-T > C

0.1296

3

572 C > A G

0.4909

3

574 C > T

0.4288

3

575 A > G

0.4380

3

576 T > G

0.2490

3

577 G > A

0.6373

3

579 A > G

0.2551

3

647 G > A

0.1735

3

662 G > A

0.1006

3

672 A > C

0.0183*

21

2340 C > T

0.0521*

21

2475 A > G

0.1254

  1. *statistically significant.