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Table 1 Primers used for amplification, sequencing and site-directed mutagenesis (SDM) of XYLT1 promoter fragments

From: First description of the complete human xylosyltransferase-I promoter region

Application

 

Primer sequence ( 5′ → 3 ′)

T A[°C]

PCR and sequencing

Fragment A

CCCTGTTTCGCGGCCCCTG

Slowdown-PCR

CCGGAGTCGAGGCTGCTGAA

 

Fragment B1

ATGGATGGGGAAAAGGACAC

58.8

TGGGGGAGGAGCCGAGGGAG

 

Fragment B2

CAGTCAGGATGGGAAAGAAC

58.8

GGTGCCAACGATGTACTAAG

 

Fragment C

AACAATCTCTTCCCACTCCC

61.2

GGAGTTACTCAACCTTCGCA

 

Fragment D

CATGCCCGGCTAATTTTTGT

61.2

CTTCGCATCTTGTCTGCTGT

 

Fragment XYLT1 238*

ACAGGGGTGTGGGGAGGGGGCGCCGCGCGGGCCAGGCGCC

58.8

GCTCGGGCCGCCGCCGCCGCCGCCGCCTCGGCTCGCCGCT

Plasmid sequencing

 

CTAGCAAAATAGGCTGTCCC

 
  

CTTAATGTTTTTGGCATCTTCCA

 

SDM

c.-403C>T

TCCCCCCGGCGCCTTCCCCATTACCCTCCCCTCCAGCGGGGA

 
  

TCCCCGCTGGAGGGGAGGGTAATGGGGAAGGCGCCGGGGGGA

 
 

c.-1088C>A

GCTGGGAGGCTGCGGGGCCAGACTTTGGGGCTTGCATCCTGC

 
  

GCAGGATGCAAGCCCCAAAGTCTGGCCCCGCAGCCTCCCAGC

 
  1. Mutated bases are marked in bold.