From: Consequences of splitting whole-genome sequencing effort over multiple breeds on imputation accuracy
MAF range | n alleles1 | n variants | HOL80 | MIX80 | ||
---|---|---|---|---|---|---|
 |  |  | MAF | r | MAF | r |
> 0.1 | > 16 | 525,575 | 0.27237 | 0.92 | 0.26094 | 0.90 |
0.05625-0.1 | 9-16 | 141,708 | 0.07655 | 0.78 | 0.09741 | 0.71 |
0.03125-0.05 | 5-8 | 89,926 | 0.04076 | 0.67 | 0.06922 | 0.57 |
0.01875-0.025 | 3-4 | 51,491 | 0.02193 | 0.57 | 0.05642 | 0.51 |
0.0125 | 2 | 22,135 | 0.01250 | 0.44 | 0.05434 | 0.51 |
0.00625 | 1 | 18,384 | 0.00625 | 0.20 | 0.05014 | 0.49 |