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Table 2 The SNPs in the 639 nt promoter region of bovine NPY gene those affects the putative transcription factors

From: Mapping of the transcription start site (TSS) and identification of SNPs in the bovine neuropeptide Y (NPY) gene

Putative transcription factors Start End Recognition sequence SNPs
PAX-4/PAX-6 paired domain binding sites -356 -338 gagataggt GCAGcccaga* A/T (-347)
GATA binding factors -348 -336 cagaGATAggt gc* A/T (-347)
Nuclear factor 1 -341 -321 ccg gtctagtcctGCCAgaga* C/A (-324)
Vertebrate SMAD family of transcription factors -331 -323 g GTCTagtc* C/A (-324)
E-box binding factors -324 -312 cctCCACgcccg g* C/A (-324)
Nuclear receptor subfamily 2 factors -280 -256 t ggaccacgcCAAAgcacaagtttc* A/C (-257)
EGR/nerve growth factor induced protein C & related factors -135 -119 aaggg AG GGggtccaga* +C (-122), +C(-124)
EGR/nerve growth factor induced protein C & related factors -133 -117 ataaGGG Ag ggggtcca* +C (-122), +C(-124)
Pleomorphic adenoma gene -132 -112 GGGGgataaggg ag ggggtcc* +C (-122), +C(-124)
Myc associated zinc fingers -131 -119 aaggg aG GGGgtc* +C (-122), +C(-124)
GC-Box factors SP1/GC -131 -117 ataagGG AG ggggtc* +C (-122), +C(-124)
Gut-enriched Krueppel like binding factor -128 -116 gataaggg aG GGG* +C (-122), +C(-124)
GATA binding factors -124 -112 ggggGATAaggg a* +C (-124)
Autoimmune regulatory element binding factor -38 -12 ttgcaaca gggtttttaTG GCtctccc* +C (-31), T/G(-20)
Tata-binding protein factor -33 -17 agcc aTAAAaaccct gt +C (-31), T/G(-20)
  1. *- minus strand