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Table 1 Neutrality statistics for six genes re-sequenced in European and African B.taurus and B.indicus cattle

From: Detecting the effects of selection at the population level in six bovine immune genes

Gene name N S No.Haplotypes Hd θ (persite) π (persite) Tajima's D Fu & Li's D Fu & Li's F Fay & Wu's H Fu's FS
ART4            
Africa 20 6 6 0.747 0.0008 0.0010 0.721 -0.239 0.048 0.779 -0.168
Europe 36 6 6 0.783 0.0007 0.0006 -0.146 1.234 0.953 0.397 -0.481
Bos indicus 22 33 16 0.961 0.0042 0.0046 0.332 1.747** 1.549* -2.338 -3.026
CD2            
Africa 20 13 5 0.616 0.0010 0.0010 0.051 1.193 1.008 -1.2 2.696
Europe 36 30 10 0.846 0.0019 0.0016 -0.576 0.611 0.221 -9.511* 1.765
Bos indicus 22 29 10 0.87 0.0021 0.0023 0.236 1.2 1.068 -7.775 1.297
TYROBP            
Africa 20 8 6 0.779 0.0006 0.0006 -0.137 0.799 0.62 -3.779* -0.05
Europe 36 20 12 0.657 0.0012 0.0006 -1.607* -1.193 -1.614 -7.356** -3.455*
Bos indicus 22 12 11 0.913 0.0008 0.0010 0.745 0.629 0.799 1.887 -2.192
IL2            
Africa 20 1 2 0.268 0.0001 0.0001 -0.086 0.627 0.512 -1.253 0.381
Europe 36 12 9 0.614 0.0008 0.0004 -1.754* -1.144 -1.613 -5.680* -3.667*
Bos indicus 22 7 7 0.593 0.0006 0.0004 -0.769 -1.479 -1.507 0.156 -2.008
IL13            
Africa 20 15 9 0.653 0.0013 0.0005 -2.156*** -3.521*** -3.731*** 1.621* -3.877**
Europe 36 14 13 0.814 0.0011 0.0008 -0.998 -2.034* -2.02 1.756 -4.530*
Bos indicus 22 14 12 0.935 0.0012 0.0014 0.741 1.232 1.296 2.13 -2.505
IL5            
Africa 20 5 6 0.737 0.0008 0.0005 -1.298 1.133 0.495 12.547*** 0.188
Europe 36 3 9 0.621 0.0009 0.0007 -0.729 0.823 0.350 -12.400** -0.288
Bos indicus 22 4 10 0.753 0.0009 0.0008 -0.563 0.459 0.159 -3.151 -1.826
  1. */**/***indicate values that fall in a 0.05/0.01/0.001 negative tail under a standard coalescent simulation. Tajima's D and Fay and Wu's H values that fall in a 0.05 negative tail under a domestication simulation are indicated in bold type.