SERpredict: Detection of tissue- or tumor-specific isoforms generated through exonization of transposable elements

Table 4 Mouse tissue-specific TE-exons

Gene	TE	Chr.	Tissue	TS score
RIKEN cDNA 9830124H08 gene	B1	14	pancreas	99.21
Gametogenetin binding protein 1	B1	17	pancreas	90.57
G protein-coupled receptor 177	B1	3	pancreas	98.05
Hydroxysteroid dehydrogenase like 2	B1	4	pancreas	98.44
NFKB inhibitor interacting Ras-like protein 1	B2	14	pancreas	96.48
RIKEN cDNA 4930444A02 gene	B2	8	pancreas	92.81
ADP-ribosylation factor-like 4A	B4	12	pancreas	93.75
Cyclin-dependent kinase 2	L2	10	pancreas	92.75
Target of EGR1. member 1	L2	4	limb	92.75
ST6	MIR	2	limb	92.74
			intestine	99.4

Potentially tissue-specific TE-exons in the mouse transcriptome. From left to right: the gene name in which the exonization occurred, the transposed elements family name, the chromosome number, the name of the tissue to which the exon is specific and the TS score.

ISSN: 2730-6844